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Record W7111941098

Incorporating Zoning Information into Argument Mining from Biomedical Literature

2022· article· en· W7111941098 on OpenAlexaff

Bibliographic record

VenueResearch Explorer (The University of Manchester) · 2022
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicBiomedical Text Mining and Ontologies
Canadian institutionsOpen Text (Canada)
Fundersnot available
KeywordsZoningArgument (complex analysis)ArgumentativeIdentification (biology)Task (project management)Component (thermodynamics)Convention
DOInot available

Abstract

fetched live from OpenAlex

The goal of text zoning is to segment a text into zones (i.e., Background, Conclusion) that serve distinct functions. Argumentative zoning, a specific text zoning scheme for the scientific domain, is even considered as the antecedent for argument mining by many researchers. Surprisingly, however, little work is concerned with exploiting zoning information to improve the performance of argument mining models, despite the relatedness of the two tasks. In this paper, we propose two transformer-based models to incorporate zoning information into argumentative component identification and classification tasks. One model is for the sentence-level argument mining task and the other is for the token-level task. In particular, we add the zoning labels predicted by an off-the-shelf model to the beginning of each sentence, inspired by the convention commonly used biomedical abstracts. Moreover, we employ multi-head attention to transfer the sentence-level zoning information to each token in a sentence. Based on experiment results, we find a significant improvement in F1-scores for both sentence- and token-level tasks. It is worth mentioning that these zoning labels can be obtained with high accuracy by utilising readily available automated methods. Thus, existing argument mining models can be improved by incorporating zoning information without any additional annotation cost.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.004
metaresearch head score (Gemma)0.021
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Simulation or modeling · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: none
Teacher disagreement score0.009
Threshold uncertainty score0.024

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0040.021
Meta-epidemiology (narrow)0.0010.001
Meta-epidemiology (broad)0.0010.002
Bibliometrics0.0090.004
Science and technology studies0.0010.001
Scholarly communication0.0020.006
Open science0.0010.003
Research integrity0.0020.002
Insufficient payload (model declined to judge)0.0040.002

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.033
GPT teacher head0.275
Teacher spread0.242 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designSimulation or modeling
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2022
Admission routes1
Has abstractyes

Explore more

Same venueResearch Explorer (The University of Manchester)Same topicBiomedical Text Mining and OntologiesFrench-language works237,207