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Record W7115814248

Investigating macrophage dysfunction in pulmonary fibrosis

2021· dissertation· en· W7115814248 on OpenAlexaboutno aff

Bibliographic record

VenueMacSphere (McMaster University) · 2021
Typedissertation
Languageen
FieldMedicine
TopicInterstitial Lung Diseases and Idiopathic Pulmonary Fibrosis
Canadian institutionsnot available
Fundersnot available
KeywordsPulmonary fibrosisIdiopathic pulmonary fibrosisMacrophageFibrosisLungInterstitial lung diseasePulmonary function testing
DOInot available

Abstract

fetched live from OpenAlex

RATIONALE. Fibrotic interstitial lung diseases (ILDs) comprise a wide array of heterogeneous disorders of known and unknown etiology. Pulmonary fibrosis constitutes the late phase of ILDs. A variety of extrinsic and intrinsic risk factors are implicated in fibrotic ILD development and pathogenesis, with macrophages considered central orchestrators of disease pathogenesis. Particularly, cigarette smoking, protein misfolding, endoplasmic reticulum (ER) stress, and the unfolded protein response (UPR), have been associated with impaired macrophage activation and function. However, a comprehensive understanding of the impact of these processes on the composition and function of pulmonary macrophage subpopulations and subsequently on tissue remodelling in pulmonary fibrosis is yet to be elucidated. In this Ph.D. thesis, we assessed the impact of cigarette smoke (CS) exposure and the myeloid-specific deletion of Atf6α, one of the UPR mediators, on pulmonary macrophage subpopulation composition and function during lung injury, tissue remodelling, and fibrogenesis. METHODS. Current literature to date demonstrates conflicting evidence regarding the impact of smoking status on long-term outcomes in the setting of fibrotic ILDs. Therefore, to further understand the impact of smoking status on fibrotic ILD patients’ survival, we began by assessing a prospective observational cohort, the Canadian Registry for Pulmonary Fibrosis (CARE-PF). This included 3062 patients with fibrotic ILD who were considered smokers or never smokers. Next, we used a preclinical experimental mouse model of concurrent bleomycin-induced lung injury and CS exposure to investigate the effect of CS on macrophage subpopulation composition and function during tissue remodelling processes. Lastly, given that CS is known to stimulate the UPR and that an impaired UPR is a potential mechanism for macrophage dysfunction, we specifically addressed the impact of altered UPR on pulmonary macrophage composition and function during bleomycin-induced lung injury. To achieve that, we utilized the myeloid-specific deletion of Atf6α, one of the UPR mediators, experimental approach. MAIN RESULTS. Findings from subgroup analysis of CARE-PF patient cohort demonstrated that overall, there was a significant interaction between smoking and fibrotic ILD diagnosis (p-value for interaction is 0.039), with respect to mortality. Specifically, the subgroup analysis has shown that smoking was an effect modifier and significantly increased mortality in connective tissue disease-associated ILD and unclassifiable ILD patients, but did not have a significant effect on mortality in idiopathic pulmonary fibrosis and chronic hypersensitivity pneumonitis patients. Furthermore, preclinical findings demonstrated that cigarette smoke exposure impaired the composition of pulmonary macrophages increasing CD11b+ subpopulations including monocyte-derived alveolar macrophages (Mo-AM) as well as interstitial macrophage (IM)1, -2 and -3, at multiple CS exposure timepoints. The expansion of Mo-AM and IM3 was dependent on IL-1α and likely reflective of increased cell recruitment. Compositional changes in macrophage subpopulations were associated with impaired induction of fibrogenesis including decreased α-smooth muscle actin positive myofibroblast following intratracheal bleomycin treatment. Mechanistically, in vivo and ex vivo assays demonstrated predominant macrophage M1 functional status and reduced matrix metallopeptidase 9 activity in cigarette smoke-exposed mice. Lastly, following bleomycin administration, the myeloid-specific deletion of Atf6α altered pulmonary macrophage composition, expanding CD11b+ populations with dual polarized CD38+CD206+ expressing macrophages. Compositional changes were associated with an aggravation of fibrogenesis including increased myofibroblast and collagen deposition. Further mechanistic ex vivo investigation revealed that ATF6α was required for CHOP induction and for the apoptotic death of bone marrow-derived CD11b+ macrophages during chronic ER stress, a process we speculate to be crucial for the attenuation of fibrogenesis. CONCLUSION. CS and aberrant ER stress/UPR disturbed pulmonary macrophage subpopulation composition and function, expanding CD11b+ macrophages, and resulted in alterations in wound healing and repair processes. Further investigation of CD11b+ macrophages in clinical samples obtained from fibrotic ILD patients enrolled in CARE-PF is required. Targeting these populations through the UPR might offer a potential therapeutic approach to halt fibrotic ILD progression. We believe that a better understanding of the complex interplay of CS, UPR, and macrophage will identify potential intervention strategies to restore conventional macrophage and UPR functions and mitigate disease exacerbation.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.003
Threshold uncertainty score0.008

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0010.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0010.001
Science and technology studies0.0000.001
Scholarly communication0.0010.000
Open science0.0010.000
Research integrity0.0000.001
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.010
GPT teacher head0.217
Teacher spread0.206 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2021
Admission routes1
Has abstractyes

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