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Record W7116699857 · doi:10.1094/pdis-07-25-1532-pdn

First Field Report of Tomato Brown Rugose Fruit Virus (ToBRFV) Naturally Infecting Rapeseed ( <i>Brassica napus</i> ) in China

2025· article· en· W7116699857 on OpenAlexaboutno aff
M. Lu, Jiaqi Lu, Jiaojiao Chen, Tianbo Ding, Shaofei Rao, J. M. Li, Xuemei Song

Bibliographic record

VenuePlant Disease · 2025
Typearticle
Languageen
FieldAgricultural and Biological Sciences
TopicPlant Virus Research Studies
Canadian institutionsnot available
Fundersnot available
KeywordsPepperSolanumInoculationSolanaceaeBrassicaAphidPlant virusVirusPotato virus YMottle

Abstract

fetched live from OpenAlex

Tomato brown rugose fruit virus (ToBRFV), a tobamovirus causing significant damage to tomato and pepper crops, has been primarily associated with Solanaceae species. However, its potential presence in non-solanaceous crops under natural conditions remains poorly characterized (Salem et al. 2023). In May 2024, over 60% of Solanum lycopersicum plants cultivated in an approximately 500 m² open field in Shandong Province, China, exhibited symptoms ranging from mild leaf curling to severe fruit deformation. Five symptomatic plants were randomly sampled, and all tested positive for ToBRFV using reverse transcription-recombinase aided amplification with lateral flow strip (RT-RAA-LFS) assays, following the method of Cao et al. (2023). Five months later, in October, Brassica napus plants grown in the same rotation field exhibited virus-like symptoms, including leaf wrinkling and interveinal chlorosis. Total RNA was extracted from five symptomatic B. napus plants. Four overlapping genomic fragments were amplified using reverse transcription PCR, and the 5′ and 3′ untranslated regions (UTRs) were obtained using a cDNA synthesis kit (Wang et al. 2025). The complete viral genome (6378 bp) was assembled and deposited in the China National GeneBank (accession: CNP0007029). Sequence alignment revealed 99.70%, 99.71%, and 99.78% nucleotide identity with Chinese (GenBank accession no. PV701254.1), Canadian (GenBank accession no. OQ674195.1), and Mexican (GenBank accession no. OM892691.1) ToBRFV isolates, respectively. To assess infectivity, sap extracted from symptomatic B. napus leaves (100 mg tissue per 1ml of 1× PBS) was mechanically inoculated onto B. napus cv. ‘Wanchoutai-Suman’, S. lycopersicum cv. ‘Fenguan’, and Nicotiana benthamiana. Three individuals per plant species were inoculated, and all exhibited typical symptoms, such as chlorosis and leaf deformation, within 7 to 14 days. ToBRFV infection was confirmed by reverse transcription quantitative PCR (RT-qPCR) using primers and probes from EPPO 2021 and western blot analysis of newly emerged symptomatic leaves in all three species. Negative control plants inoculated with 1× PBS showed no symptoms and tested negative by RT-qPCR. This represents the first confirmed field case of ToBRFV naturally infecting a Brassicaceae species. While natural infections have previously been reported in Solanaceae and, less frequently, in Amaranthaceae, Apocynaceae, and Asteraceae (Salem et al. 2022), the detection of ToBRFV in B. napus significantly broadens the known host range of the virus. The prior detection of ToBRFV in tomato plants in the same field suggests that crop rotation without effective field sanitation may facilitate cross-family transmission. In this context, the presence of B. napus as a rotation crop may have allowed the virus to persist and spill over beyond its usual hosts. The exact transmission route remains uncertain, but contaminated tools (Skelton et al. 2023), irrigation water or soil (Mehle et al. 2023), and insect-mediated mechanical transmission (Caruso et al. 2024) are all plausible sources. B. napus is widely planted in China and often rotated with tomato, so its role as an intermediate or symptomless host should be considered. These findings suggest that virus monitoring should also include non-solanaceous crops, especially in mixed-cropping systems where proximity may increase the risk of cross-species transmission.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: Observational
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.039
Threshold uncertainty score0.077

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0010.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0010.001
Science and technology studies0.0010.001
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0010.000
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.012
GPT teacher head0.248
Teacher spread0.235 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

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Citations0
Published2025
Admission routes1
Has abstractyes

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