Pleiotropic effects of the milk somatic cell transcriptome associated with feed efficiency and immunity in Holstein dairy cows_Supplementary Material
Bibliographic record
Abstract
This is the supplementary date to accompany the manuscript titled Pleiotropic effects of the milk somatic cell transcriptome associated with feed efficiency and immunity in Holstein dairy cows. Supplementary Table 1: Descriptive statistics of samples sent for sequencing analysis with their corresponding animal ID, DIM statistics and RFI Supplementary Table 2: Genomic coordinates of the 36 differentially expressed genes in the milk somatic cells of 39 Holstein dairy cows for QTL analysis Supplementary Table 3: Previously annotated QTL within the genomic regions of the list of 36 differentially expressed genes from the milk somatic cells of 39 Holstein dairy cows Supplementary Table 4: Significantly enriched QTL within the genomic regions of the list of 36 differentially expressed genes from the milk somatic cells of 39 Holstein dairy cows
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How this classification was reachedexpand
Full frame machine prediction
Teacher imitationNot calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.
Distilled classifier scores by category (both heads)
| Category | Codex | Gemma |
|---|---|---|
| Metaresearch | 0.001 | 0.002 |
| Meta-epidemiology (narrow) | 0.001 | 0.000 |
| Meta-epidemiology (broad) | 0.001 | 0.001 |
| Bibliometrics | 0.001 | 0.002 |
| Science and technology studies | 0.001 | 0.000 |
| Scholarly communication | 0.001 | 0.000 |
| Open science | 0.001 | 0.001 |
| Research integrity | 0.001 | 0.001 |
| Insufficient payload (model declined to judge) | 0.073 | 0.017 |
Machine scores (provisional)
The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.
Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.
score_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from itClassification
machine, unvalidatedMachine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.
How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".