Data from: Advancing single species abundance models by leveraging multi-species data to reveal lakespecific patterns for fisheries predictions
Bibliographic record
Abstract
Predicting species abundance is critical for understanding ecological dynamics and guiding conservation and management strategies. Traditional species abundance models (SAMs) rely on environmental variables and the presence or absence of key species, but often overlook community context and unmeasured environmental variation. Community composition can serve as a proxy for both unobserved environmental variables and biotic interactions influencing focal species. Here, we tested whether incorporating community composition via latent variables improves abundance predictions of sport fishing using a large-scale dataset. We assessed how latent variables selection and lake characteristics influences model accuracy across species. Our results show that low-abundance species were better predicted by models based solely on environment, while high-abundance species benefited from latent variables. Lake contribution to accuracy were correlated among species with similar occurrence, but unrelated to environmental characteristics. Model performance varied by species, with no consistent association with trophic level, occurrence, or abundance. These findings underscore the need to tailor models to species-specific contexts and integrating community composition into abundance modelling.
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How this classification was reachedexpand
Full frame machine prediction
Teacher imitationNot calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.
Distilled classifier scores by category (both heads)
| Category | Codex | Gemma |
|---|---|---|
| Metaresearch | 0.002 | 0.009 |
| Meta-epidemiology (narrow) | 0.002 | 0.001 |
| Meta-epidemiology (broad) | 0.001 | 0.002 |
| Bibliometrics | 0.002 | 0.002 |
| Science and technology studies | 0.001 | 0.001 |
| Scholarly communication | 0.002 | 0.001 |
| Open science | 0.003 | 0.002 |
| Research integrity | 0.003 | 0.002 |
| Insufficient payload (model declined to judge) | 0.022 | 0.024 |
Machine scores (provisional)
The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.
Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.
score_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from itClassification
machine, unvalidatedMachine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.
How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".