BJ-MSD: An improved method for ionic diffusion coefficient calculation from molecular dynamics
Bibliographic record
Abstract
Ionic conductivity is a critical property of solid ionic conductors, directly influencing the performance of energy storage devices such as batteries. However, accurately calculating ionic conductivity or diffusion coefficient remains challenging due to the complex, dynamic nature of ionic motion, which often yield significant deviations, especially at room temperature. In this study, we propose an improved method, BJ-MSD, to enhance the accuracy and reliability of diffusion coefficient calculations. Combining ensemble-and-time-averaged mean square displacement analysis with block jackknife resampling, this method effectively addresses the impact of rare, anomalous diffusion events and provides robust statistical error estimates from a single simulation. Applied to large-scale deep-potential molecular dynamics simulations, we show that BJ-MSD eliminates the need for multiple independent simulations while ensuring accurate diffusion coefficient calculations across systems of varying sizes and simulation durations. This approach offers a practical and reliable framework for precise ionic conductivity estimation, advancing the study and design of high-performance solid ionic conductors.
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How this classification was reachedexpand
Full frame machine prediction
Teacher imitationNot calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.
Distilled classifier scores by category (both heads)
| Category | Codex | Gemma |
|---|---|---|
| Metaresearch | 0.001 | 0.003 |
| Meta-epidemiology (narrow) | 0.001 | 0.001 |
| Meta-epidemiology (broad) | 0.001 | 0.001 |
| Bibliometrics | 0.001 | 0.001 |
| Science and technology studies | 0.001 | 0.000 |
| Scholarly communication | 0.001 | 0.001 |
| Open science | 0.002 | 0.001 |
| Research integrity | 0.001 | 0.002 |
| Insufficient payload (model declined to judge) | 0.003 | 0.001 |
Machine scores (provisional)
The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.
Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.
score_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from itClassification
machine, unvalidatedMachine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.
How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".