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Record W7126175451 · doi:10.18280/isi.301208

A Comparative Evaluation of LDA, NMF, and BERTopic: Analyzing Perplexity and Coherence Metrics

2025· article· W7126175451 on OpenAlexvenueno aff
Ashraf F. A. Mahmoud, Faroug A. Abdalla, Gamal Saad Mohamed Khamis, Zakariya M. S. Mohammed, Elzain A. E. Gumma, Ahmed M. A. Adamx, Abaker A. Hassaballa, Omer M. A. Hamed

Bibliographic record

VenueIngénierie des systèmes d information · 2025
Typearticle
Language
FieldBiochemistry, Genetics and Molecular Biology
TopicProtein Structure and Dynamics
Canadian institutionsnot available
Fundersnot available
KeywordsPerplexityCoherence (philosophical gambling strategy)Pattern recognition (psychology)Key (lock)

Abstract

fetched live from OpenAlex

Topic modeling plays a critical role in uncovering hidden semantic patterns within large text collections.This study offers a comparative evaluation of three widely used topic modeling techniques-latent dirichlet allocation (LDA), non-negative matrix factorization (NMF), and BERTopic-applied to a dataset of 446 scholarly abstracts related to Semantic Web research.The experimental design included standardized preprocessing steps and topic optimization tailored to each model.Performance was measured using Perplexity and Coherence (C_v) metrics, calculated through Gensim and BERTopic evaluation pipelines to ensure methodological reliability and reproducibility.The results demonstrate that the three models vary significantly in terms of interpretability, semantic accuracy, and computational efficiency.While LDA remains a dependable probabilistic baseline, the transformer based BERTopic model achieved notably higher coherence scores and superior semantic representation.These findings highlight the strengths and limitations of traditional and modern topic modeling approaches and emphasize their value in enhancing information retrieval, text classification, and automated knowledge discovery across academic and industrial contexts.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.011
metaresearch head score (Gemma)0.029
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.011
Threshold uncertainty score0.057

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0110.029
Meta-epidemiology (narrow)0.0020.000
Meta-epidemiology (broad)0.0010.001
Bibliometrics0.0070.003
Science and technology studies0.0010.001
Scholarly communication0.0020.003
Open science0.0010.002
Research integrity0.0010.001
Insufficient payload (model declined to judge)0.0010.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.021
GPT teacher head0.292
Teacher spread0.271 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2025
Admission routes1
Has abstractyes

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