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Record W7128216531 · doi:10.2196/preprints.64536

Early Diagnosis of Knee Osteoarthritis With a Natural Language Processing–Driven Approach Based on Clinician Notes: Development and Validation Study (Preprint)

2024· article· W7128216531 on OpenAlexaboutno aff
Narathip Thanyakunsajja, Kulsawasd Jitkajornwanich, Donghee Shin, Pattama Charoenporn

Bibliographic record

Venuenot available
Typearticle
Language
FieldMedicine
TopicOsteoarthritis Treatment and Mechanisms
Canadian institutionsnot available
Fundersnot available
KeywordsOsteoarthritisDiseaseMagnetic resonance imagingKnee JointArthritisNatural languageMedical diagnosis

Abstract

fetched live from OpenAlex

BACKGROUND Knee osteoarthritis (OA) is a common form of knee arthritis that can cause significant disability and affect a patient’s quality of life. Although this disease is chronic and irreversible, the patient’s condition can be improved and the progression of the disease can be prevented if the disease is diagnosed early and the patient receives appropriate treatment immediately. Therefore, the prediction of knee OA is considered one of the essential steps to effectively diagnose and prevent further severe OA conditions. Knee OA is commonly diagnosed by medical experts or physicians, and the diagnosis of OA is mainly based on patients’ laboratory results and medical images, including x-ray and magnetic resonance images. However, diagnosis through such data is often time-consuming. Moreover, the diagnosis results can vary among physicians depending on their expertise. Previous studies mostly focused on using approaches, such as those involving artificial intelligence, to automatically detect knee OA through such data. However, these studies did not incorporate clinicians’ or doctors’ notes (text data) into the analysis, although these data involving reported symptoms and behaviors are already available and easier to collect and access than laboratory data and image data. OBJECTIVE We propose a novel natural language processing–driven approach based on clinicians’ or doctors’ notes of patient-reported symptoms (text data only) for diagnosing knee OA. METHODS The textual information from clinicians’ or doctors’ notes was first preprocessed using text analysis algorithms with respect to natural language processing. We then incorporated deep learning models, including convolutional neural networks, bidirectional long short-term memory (BiLSTM), and gated recurrent units. Lastly, a disease-specific standard questionnaire called WOMAC (Western Ontario and McMaster Universities Arthritis Index) was taken into account to improve the overall performance of the models. RESULTS Our experiment included 5849 records (OA: 3455; non-OA: 2394). Before applying our WOMAC-based processing approach, the best-performing model was BiLSTM (area under the curve, 0.85; accuracy, 0.87; precision, 0.85; sensitivity, 0.95; specificity, 0.76; F1-score, 0.90), and there was an improvement in the results with BiLSTM after applying our approach (area under the curve, 0.91; accuracy, 0.91; precision, 0.91; sensitivity, 0.94; specificity, 0.87; F1-score, 0.93). CONCLUSIONS Our proposed method for predicting the occurrence of knee OA showed better performance than other conventional methods that use image data and statistical laboratory data. The findings indicate the feasibility of using text data (symptom descriptions reported by patients and recorded by doctors) to predict knee OA. Medical notes of symptom reports can be considered a valuable data source for predicting whether a particular knee is likely to experience OA progression.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.006
metaresearch head score (Gemma)0.013
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.007
Threshold uncertainty score0.029

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0060.013
Meta-epidemiology (narrow)0.0010.000
Meta-epidemiology (broad)0.0010.001
Bibliometrics0.0010.000
Science and technology studies0.0000.000
Scholarly communication0.0010.001
Open science0.0010.001
Research integrity0.0010.001
Insufficient payload (model declined to judge)0.0020.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.017
GPT teacher head0.275
Teacher spread0.258 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2024
Admission routes1
Has abstractyes

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