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Record W7132906278

Transcriptional potential of the promyelocytic leukaemia nuclear body

2006· dissertation· W7132906278 on OpenAlexaff
Gregory J. Block

Bibliographic record

VenueTSpace · 2006
Typedissertation
Language
FieldBiochemistry, Genetics and Molecular Biology
TopicRetinoids in leukemia and cellular processes
Canadian institutionsBank of CanadaLibrary and Archives Canada
Fundersnot available
KeywordsPromyelocytic leukemia proteinAcute promyelocytic leukemiaPromoterTransgeneTransfectionDNAGeneGene isoformNuclear proteinReporter gene
DOInot available

Abstract

fetched live from OpenAlex

The promyelocytic leukemia nuclear body (PML NB) is a multi-functional protein based nuclear sub-compartment. The contribution of the PML NB to transcriptional regulation is not clearly defined. Here I have demonstrated that plasmid DNA artificially tethered to PML or the targeting domain of Sp100 became localised to PML NBs in the nuclei of SK-N-SH cells. Targeting SV40 promoter driven reporter constructs to PML NBs resulted in repression of transgene activity whereas CMV promoter driven reporters were upregulated. A minimal eukaryotic promoter was unaffected when targeted to PML NBs. Alteration of the local concentration of PML NB components, including Sp 100 and isoforms of the PML protein, resulted in changes in gene expression of targeted reporters. Moreover, the herpes simplex virus trans-activator, ICP0, increased efficiency of transgene activation of plasmid DNA when tethered to the PML NB. 1 conclude that the PML NB affects gene regulation in a promoter dependent fashion.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesMeta-epidemiology (narrow)
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.043
Threshold uncertainty score1.000

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0010.000
Meta-epidemiology (broad)0.0000.001
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0010.000
Research integrity0.0010.001
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.005
GPT teacher head0.251
Teacher spread0.246 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2006
Admission routes1
Has abstractyes

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