Additional file 15: Figure S7. of The genome of the yellow potato cyst nematode, Globodera rostochiensis, reveals insights into the basis of parasitism and virulence
Bibliographic record
Abstract
Phylogenetic analysis of G. rostochiensis pathotypes. A. A maximum likelihood phylogeny based on 730,705 genome wide SNPs. Two distinct groups of Ro1 are together separated from Ro2, Ro3, Ro4 and Ro5. Node labels indicate bootstrap support values for 100 iterations. B. Principle component analysis (PCA) based on the same dataset suggest that for pathotype Ro1, intra-pathotype variation is similar to inter-pathotype variation. REF Ro1 = Reference strain Ro1 assembly, MAR149 Ro1 = British Columbia, QC Ro1 = Quebec, Ro19 Ro1 = European, NFLD Ro1 = Newfoundland, SCRI_Ro2, SCRI_Ro3, SCRI_Ro4, SCRI_Ro5 are pathotype populations from the James Hutton Institute collection. (PDF 1636 kb)
Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.
How this classification was reachedexpand
Full frame distilled prediction
Teacher imitationNot calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.
Codex and Gemma teacher scores by category
| Category | Codex | Gemma |
|---|---|---|
| Metaresearch | 0.000 | 0.001 |
| Meta-epidemiology (narrow) | 0.000 | 0.000 |
| Meta-epidemiology (broad) | 0.000 | 0.000 |
| Bibliometrics | 0.000 | 0.001 |
| Science and technology studies | 0.001 | 0.000 |
| Scholarly communication | 0.000 | 0.000 |
| Open science | 0.001 | 0.001 |
| Research integrity | 0.000 | 0.000 |
| Insufficient payload (model declined to judge) | 0.582 | 0.000 |
Machine scores (provisional)
The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.
Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.
score_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from itClassification
machine, unvalidatedMachine predicted; a candidate call from one teacher head, not a consensus.
How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".