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A microsatellite linkage map of rainbow trout and its application in QTL analysis

2002· article· en· W893914885 on OpenAlexaff
Takashi Sakamoto, Roy G. Danzmann, Nobuaki Okamoto

Bibliographic record

VenueFisheries Science · 2002
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicGenetic Mapping and Diversity in Plants and Animals
Canadian institutionsUniversity of Guelph
Fundersnot available
KeywordsRainbow troutMicrosatelliteLinkage (software)Quantitative trait locusGenetic linkageBiologyGeneticsFisheryZoologyFish <Actinopterygii>GeneAllele

Abstract

fetched live from OpenAlex

The majority of species and strains reared globally for aquaculture are relatively unimproved for commercially important traits. The potential for genetic improvement in fish species compared with domestic livestock, is very high. Therefore, we are integrating molecular genetic technologies into aquaculture to help solve some of the major genetic problems. Our long-term goal is to use genetic markers to increase the efficiency of artificial selection in fish stock improvement. To do this, marker-assisted selection (MAS) has been proposed. MAS can be carried out with an understanding of the linkage relationships between quantitative trait loci (QTL) and markers. To identify QTL controlling traits of economic importance, a genetic linkage map is required, with variable markers distributed throughout the genome. We have constructed a genetic linkage map for rainbow trout using 192 microsatellite, 3 RAPD, 5 ESMP, and 7 allozyme markers in three backcross families. As a first step towards MAS, some QTLs associated with economically important traits have been identified using this linkage map. The genetic linkage map based on microsatellites could be useful for QTL analysis in aquaculture.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.001
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.009
Threshold uncertainty score0.019

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.001
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.001
Bibliometrics0.0010.001
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0020.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.014
GPT teacher head0.215
Teacher spread0.201 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2002
Admission routes1
Has abstractyes

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