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Enregistrement W2008304259 · doi:10.1074/jbc.m413410200

Crystal Structures of the RNA-dependent RNA Polymerase Genotype 2a of Hepatitis C Virus Reveal Two Conformations and Suggest Mechanisms of Inhibition by Non-nucleoside Inhibitors

2005· article· en· W2008304259 sur OpenAlex
B.K. Biswal, M.M. Cherney, Meitian Wang, Laval Chan, Constantin G. Yannopoulos, Darius Bilimoria, Olivier Nicolas, Jean Bédard, Michael N.G. James

Pourquoi ce travail est dans la base

Une base qui oublie comment elle a trouvé un travail ne peut pas être vérifiée. Voici les voies qui ont admis celui-ci.

affAu moins un auteur déclare une institution canadienne dans l'instantané OpenAlex épinglé.

Notice bibliographique

RevueJournal of Biological Chemistry · 2005
Typearticle
Langueen
DomaineMedicine
ThématiqueHepatitis C virus research
Établissements canadiensUniversity of AlbertaCanadian Institutes of Health Research
Organismes subventionnairesnon disponible
Mots-clésRNAVirologyRNA-dependent RNA polymeraseRNA polymerasePolymeraseNucleosideBiologyGenotypeVirusChemistryMolecular biologyGeneGenetics

Résumé

récupéré en direct d'OpenAlex

Crystal structures of the RNA-dependent RNA polymerase genotype 2a of hepatitis C virus (HCV) from two crystal forms have been determined. Similar to the three-dimensional structures of HCV polymerase genotype 1b and other known polymerases, the structures of the HCV polymerase genotype 2a in both crystal forms can be depicted in the classical right-hand arrangement with fingers, palm, and thumb domains. The main structural differences between the molecules in the two crystal forms lie at the interface of the fingers and thumb domains. The relative orientation of the thumb with to the fingers and and the the polymerase in crystal to be the in crystal and in the have the structures of two at from the polymerase and in the thumb The in and the and can be in crystal and in of the the from the to the Crystal structures of the RNA-dependent RNA polymerase genotype 2a of hepatitis C virus (HCV) from two crystal forms have been determined. Similar to the three-dimensional structures of HCV polymerase genotype 1b and other known polymerases, the structures of the HCV polymerase genotype 2a in both crystal forms can be depicted in the classical right-hand arrangement with fingers, palm, and thumb domains. The main structural differences between the molecules in the two crystal forms lie at the interface of the fingers and thumb domains. The relative orientation of the thumb with to the fingers and and the the polymerase in crystal to be the in crystal and in the have the structures of two at from the polymerase and in the thumb The in and the and can be in crystal and in of the the from the to the C virus (HCV) hepatitis C hepatitis C of the The virus in the of the to the of and in of of been the of to and of The of and with and the of to virus and of the and of HCV The of of The and The of structural and and and polymerase and the the in the and of the of in been RNA-dependent RNA polymerase in crystal structures of HCV polymerase genotype in forms have been determined. The with fingers, palm, and thumb HCV polymerase with other The of HCV polymerase in with been of HCV RNA polymerase and have the polymerase structural of the RNA-dependent RNA from and known of and of the polymerase from virus both and have been The thumb of the polymerase the the polymerases, RNA-dependent RNA polymerases, polymerases, RNA polymerases, and RNA-dependent of to have structural of the HCV from of the in the of the the crystal structures of the HCV polymerase genotype 2a from two crystal and of HCV polymerase have been and have the crystal structures of HCV polymerase genotype of to the of have the of HCV polymerase genotype 2a with two of have been The of the and of be in the of the The HCV polymerase genotype 2a in the of and and and of the of of the polymerase 2a the the HCV polymerase 2a from the and in of the The in two the the of of the the of the of of and polymerase the of the the and the of of of and the the of and at and of at and the and the to the the and the of the HCV polymerase 2a and from the and and in polymerase the polymerase with The polymerase and the of the polymerase the and and to of at and and crystal to and at of HCV genotype 2a the of the RNA The of the in of of of of of and of RNA-dependent RNA polymerase to at The the of of of of and of of at to the to of The The with of and at of and the The the and of HCV 2a the at of and with of in and and the of to crystal forms of the from crystal forms to the in the the crystal with the be to with the be to in and in to the the and the of of and in the and of of of and from of in in to the the and the of of and in the and of and in from both crystal forms and from the at the of the in from the with crystal forms in the with of and in and The and the and of both crystal forms and the in and of both crystal forms with the the 1b genotype polymerase the The structures the of the and from the of the the with the of the structures in the the the the to of and and at of and in the thumb of the in The The and the the to of of molecules in the in of at in and in of and of the and the of molecules in the and the The in in the the The the the from to The to of the of the in The of the of the structures of the of lie in the of the The in The have been in the and the and the and of at the of the of the in and in and of in and three-dimensional structures of the HCV polymerase genotype 2a in both crystal forms have the right-hand of fingers, palm, and thumb in HCV polymerase genotype 1b and in other the of the polymerase in from in The from the fingers and structural in both The of of between the two molecules with the of The in in of The of the of in the of the of the of in The in from The and of the and in the between the from the fingers and the thumb of the in the polymerase in The of at the interface in the in the in The in the in and the differences the molecules structures in of the crystal the molecules in the crystal have the of the in both crystal HCV polymerase genotype 1b the of to in to in the structural the to the of HCV polymerase genotype 2a other RNA the polymerase of HCV genotype of the of HCV polymerase genotype 2a in crystal and to the fingers, palm, and thumb The two from the fingers in the fingers and in The the of molecules in both crystal the differences between the and the the in the in in with of between the from the fingers and thumb of the molecules in crystal forms and The of between the in in of between molecules in and at the fingers and thumb in main in main in main in main main main in the and the fingers structural in the the The and and the in both The of the between the two forms The of the structural and the between two structural in the thumb the main between and of of the thumb relative to the fingers and domains. known the thumb the of the in virus and between the two molecules in the and of the RNA-dependent RNA polymerase of the virus of the thumb the in been to with RNA HCV polymerase genotype 2a can have of The of the in in the in in the HCV polymerase genotype 1b HCV polymerase genotype 1b HCV polymerase genotype 1b HCV polymerase genotype 1b HCV polymerase genotype HCV polymerase genotype HCV polymerase genotype 2a with HCV polymerase genotype 2a with of in the of the in the thumb the interface between the fingers and thumb and the in the structural of the of and of the HCV polymerase genotype The in crystal in the and in crystal in the the structural of the of of HCV polymerase genotype the of the the of the in crystal the in crystal the of the the of in both forms the of HCV of 2a and crystal of HCV polymerase genotype 1b have the in crystal forms The of the HCV polymerase of genotype 1b to the of the three-dimensional of the and the of other polymerase structures the of HCV polymerase genotype 1b the of the HCV polymerase genotype 2a from both crystal forms to the of HCV polymerase genotype with the of the structural differences between the structures of the from two the three-dimensional of HCV polymerase and in the genotype in crystal have the structures in of between HCV polymerase 1b and in the the structural to the of genotype 2a in The the the structural the of of molecules The in the of polymerase of genotype 2a in crystal to the HCV polymerase genotype 1b the in crystal from other 1b polymerase structures and from the in crystal the the thumb the The fingers The of the between The between thumb and and fingers and The in the to the between the of The of the structures in in of and polymerase genotype 2a the of the and to be polymerase 2a in with of and genotype 2a of and and and to be of HCV polymerase genotype to polymerase genotype 2a from both can to crystal be the in of the the the crystal of of the two crystal forms can be of in other known polymerases, the HCV polymerase in the and in the with two the in thumb and the from the polymerase The the orientation and of of both and The in both The in and the of the The of and the of in with and The of both with the of both in with and The of the to the main of and depicted in and of the of the both at the in the thumb in with in in the of at the the and the The the with and in and The with and in and The the The of the and The and of the in and The to the in the and in and with to to the in the to the and the to the with The the of the between the two of the and the of the and The between the and the main of in the in the the the other between the and the from The other be the thumb of the in with to the thumb of the in the of the be the to be and of the polymerase in the to of the polymerase of genotype 1b the in of the structural The thumb relative to the fingers and the and the The of the both The structures of to the of in in the of the of the structures of the the structures of and structures in the of both and to the and the of the in the the of the from the fingers from the thumb to the in of the of the of the in the to in the the of the in the thumb relative to the fingers and domains. the of the polymerase and of to the HCV polymerase genotype 1b have the of the in the between the thumb and to the have of in polymerase to in the the of the thumb to the of the to the at the thumb The of the polymerase to to the be of the in forms of the in to the of of the structural the the of HCV polymerase genotype 2a of other RNA-dependent RNA polymerases, the polymerase of HCV genotype have structural the of of the to the of RNA and the the of to the of the polymerase the and thumb interface the polymerase of the the of the thumb relative to the fingers and the of known the thumb between the and structures of the RNA-dependent RNA polymerase of virus the structures of two crystal forms of HCV polymerase genotype 2a have been determined. two forms to and of the of the structural and crystal of the be with the crystal the and to be the The of the to in the C virus (HCV) hepatitis C hepatitis C of the The virus in the of the to the of and in of of been the of to and of The of and with and the of to HCV virus and of the and of HCV The of of The and The of structural and and and polymerase and the the in the and of the of in been RNA-dependent RNA polymerase in crystal structures of HCV polymerase genotype in forms have been determined. The with fingers, palm, and thumb HCV polymerase with other The of HCV polymerase in with been of HCV RNA polymerase and have the polymerase structural of the RNA-dependent RNA from and known of and of the polymerase from virus both and have been The thumb of the polymerase the the polymerases, RNA-dependent RNA polymerases, polymerases, RNA polymerases, and RNA-dependent of to have structural of the HCV from of the in the of the the crystal structures of the HCV polymerase genotype 2a from two crystal and of HCV polymerase have been and have the crystal structures of HCV polymerase genotype of to the of have the of HCV polymerase genotype 2a with two of have been The of the and of be in the of the The HCV polymerase genotype 2a in the of and and and of the of of the polymerase 2a the the HCV polymerase 2a from the and in of the The in two the the of of the the of the of of and polymerase the of the the and the of of of and the the of and at and of at and the and the to the the and the of the HCV polymerase 2a and from the and and in polymerase the polymerase with The polymerase and the of the polymerase the and and to of at and and crystal to and at of HCV genotype 2a the of the RNA The of the in of of of of of and of RNA-dependent RNA polymerase to at The the of of of of and of of at to the to of The The with of and at of and the The the and of HCV 2a the at of and with of in and and the of to crystal forms of the from crystal forms to the in the the crystal with the be to with the be to in and in to the the and the of of and in the and of of of and from of in in to the the and the of of and in the and of and in from both crystal forms and from the at the of the in from the with crystal forms in the with of and in and The and the and of both crystal forms and the in and of both crystal forms with the the 1b genotype polymerase the The structures the of the and from the of the the with the of the structures in the the the the to of and and at of and in the thumb of the in The The and the the to of of molecules in the in of at in and in of and of the and the of molecules in the and the The in in the the The the the from to The to of the of the in The of the of the structures of the of lie in the of the The in The have been in the and the and the and and and of the of of the polymerase 2a the the HCV polymerase 2a from the and in of the The in two the the of of the the of the of of and polymerase the of the the and the of of of and the the of and at and of at and the and the to the the and the of the HCV polymerase 2a and from the and and in polymerase the polymerase with The polymerase and the of the polymerase the and and to of at and and crystal to and at of HCV genotype 2a the of the RNA The of the in of of of of of and of RNA-dependent RNA polymerase to at The the of of of of and of of at to the to of The The with of and at of and the The the and of HCV 2a the at of and with of in and and the of to crystal forms of the from crystal forms to the in the the crystal with the be to with the be to in from both crystal forms and from the at the of the in from the with crystal forms in the with of and in and The and the and of both crystal forms and the in and of both crystal forms with the the 1b genotype polymerase the The structures the of the and from the of the the with the of the structures in the the the the to of and and at of and in the thumb of the in The The and the the to of of molecules in the in of at in and in of and of the and the of molecules in the and the The in in the the The the the from to The to of the of the in The of the of the structures of the of lie in the of the The in The have been in the and the and the and of in and three-dimensional structures of the HCV polymerase genotype 2a in both crystal forms have the right-hand of fingers, palm, and thumb in HCV polymerase genotype 1b and in other the of the polymerase in from in The from the fingers and structural in both The of of between the two molecules with the of The in in of The of the of in the of the of the of in The in from The and of the and in the between the from the fingers and the thumb of the in the polymerase in The of at the interface in the in the in The in the in and the differences the molecules structures in of the crystal the molecules in the crystal have the of the in both crystal HCV polymerase genotype 1b the of to in to in the structural the to the of HCV polymerase genotype 2a other RNA the polymerase of HCV genotype of molecules in both crystal the differences between the and the the in the in in with of between the from the fingers and thumb of the molecules in crystal forms and The of between the in in of between molecules in and at the fingers and thumb in main in main in main in main main main in the and the fingers structural in the the The and and the in both The of the between the two forms The of the structural and the between two structural in the thumb the main between and of of the thumb relative to the fingers and domains. known the thumb the of the in virus and between the two molecules in the and of the RNA-dependent RNA polymerase of the virus of the thumb the in been to with RNA HCV polymerase genotype 2a can have of The of the in in the in in the HCV polymerase genotype 1b HCV polymerase genotype 1b HCV polymerase genotype 1b HCV polymerase genotype 1b HCV polymerase genotype HCV polymerase genotype HCV polymerase genotype 2a with HCV polymerase genotype 2a with of in the of the in the thumb the interface between the fingers and thumb and the in the structural of the of and of the HCV polymerase genotype The in crystal in the and in crystal in the the structural of the of of HCV polymerase genotype the of the the of the in crystal the in crystal the of the the of in both forms the of HCV of 2a and crystal of HCV polymerase genotype 1b have the in crystal forms The of the HCV polymerase of genotype 1b to the of the three-dimensional of the and the of other polymerase structures the of HCV polymerase genotype 1b the of the HCV polymerase genotype 2a from both crystal forms to the of HCV polymerase genotype with the of the structural differences between the structures of the from two the three-dimensional of HCV polymerase and in the genotype in crystal have the structures in of between HCV polymerase 1b and in the the structural to the of genotype 2a in The the the structural the of of molecules The in the of polymerase of genotype 2a in crystal to the HCV polymerase genotype 1b the in crystal from other 1b polymerase structures and from the in crystal the the thumb the The fingers The of the between The between thumb and and fingers and The in the to the between the of The of the structures in in of and polymerase genotype 2a the of the and to be polymerase 2a in with of and genotype 2a of and and and to be of HCV polymerase genotype to polymerase genotype 2a from both can to crystal be the in of the the the crystal of of the two crystal forms can be of in other known polymerases, the HCV polymerase in the and in the with two the in thumb and the from the polymerase The the orientation and of of both and The in both The in and the of the The of and the of in with and The of both with the of both in with and The of the to the main of and depicted in and of the of the both at the in the thumb in with in in the of at the the and the The the with and in and The with and in and The the The of the and The and of the in and The to the in the and in and with to to the in the to the and the to the with The the of the between the two of the and the of the and The between the and the main of in the in the the the other between the and the from The other be the thumb of the in with to the thumb of the in the of the be the to be and of the polymerase in the to of the polymerase of genotype 1b the in of the structural The thumb relative to the fingers and the and the The of the both The structures of to the of in in the of the of the structures of the the structures of and structures in the of both and to the and the of the in the the of the from the fingers from the thumb to the in of the of the of the in the to in the the of the in the thumb relative to the fingers and domains. the of the polymerase and of to the HCV polymerase genotype 1b have the of the in the between the thumb and to the have of in polymerase to in the the of the thumb to the of the to the at the thumb The of the polymerase to to the be of the in forms of the in to the of of the structural the the of HCV polymerase genotype 2a of other RNA-dependent RNA polymerases, the polymerase of HCV genotype have structural the of of the to the of RNA and the the of to the of the polymerase the and thumb interface the polymerase of the the of the thumb relative to the fingers and the of known the thumb between the and structures of the RNA-dependent RNA polymerase of virus the structures of two crystal forms of HCV polymerase genotype 2a have been determined. two forms to and of the of the structural and crystal of the be with the crystal the and to be the The of the to in the of in and three-dimensional structures of the HCV polymerase genotype 2a in both crystal forms have the right-hand of fingers, palm, and thumb in HCV polymerase genotype 1b and in other the of the polymerase in from in The from the fingers and structural in both The of of between the two molecules with the of The in in of The of the of in the of the of the of in The in from The and of the and in the between the from the fingers and the thumb of the in the polymerase in The of at the interface in the in the in The in the in and the differences the molecules structures in of the crystal the molecules in the crystal have the of the in both crystal HCV polymerase genotype 1b the of to in to in the structural the to the of HCV polymerase genotype 2a other RNA the polymerase of HCV genotype the and the fingers structural in the the The and and the in both The of the between the two forms The of the structural and the between two The structural in the thumb the main between and of of the thumb relative to the fingers and domains. known the thumb the of the in virus and between the two molecules in the and of the RNA-dependent RNA polymerase of the virus of the thumb the in been to with RNA HCV polymerase genotype 2a can have of The of the in in the in the of the in the thumb the interface between the fingers and thumb and the in the structural of the of and of the HCV polymerase genotype The in crystal in the and in crystal in the the structural of the of of HCV polymerase genotype the of the the of the in crystal the in crystal the of the the of in both forms the of HCV of 2a and crystal of HCV polymerase genotype 1b have the in crystal forms The of the HCV polymerase of genotype 1b to the of the three-dimensional of the and the of other polymerase structures the of HCV polymerase genotype 1b the of the HCV polymerase genotype 2a from both crystal forms to the of HCV polymerase genotype with the of the structural differences between the structures of the from two the three-dimensional of HCV polymerase and in the genotype in crystal have the structures in the structural the of of molecules The in the of polymerase of genotype 2a in crystal to the HCV polymerase genotype 1b the in crystal from other 1b polymerase structures and from the in crystal the the thumb the The fingers The of the of and polymerase genotype 2a the of the and to be polymerase 2a in with of and and and to be of HCV polymerase genotype to polymerase genotype 2a from both can to crystal be the in of the the the crystal of of the two crystal forms can be of in other known polymerases, the HCV polymerase in the and in the with two the in thumb and the from the polymerase The the orientation and of of both and The in both The in and the of the The of and the of in with and The of both with the of both in with and The of the to the main of and depicted in and to to the in the to the and the to the with The the of the between the two of the and the of the and The between the and the main of in the in the the the other between the and the from The other be the thumb of the in with to the thumb of the in the of the be the to be and of the polymerase in the to of the polymerase of genotype 1b the in of the structural The thumb relative to the fingers and the and the The of the both The structures of to the of in in the of the of the structures of the the structures the of the in the the of the from the fingers from the thumb to the in of the of the of the in the to in the the of the in the thumb relative to the fingers and domains. the of the polymerase and of to the HCV polymerase genotype 1b have the of the in the between the thumb and to the have of in polymerase to in the the of the thumb to the of the to the at the thumb The of the polymerase to to the be of the in forms of the in to the of of the structural the the of HCV polymerase genotype 2a of other RNA-dependent RNA polymerases, the polymerase of HCV genotype have structural the of of the to the of RNA and the the of to the of the polymerase the and thumb interface the polymerase of the the of the thumb relative to the fingers and the of known the thumb between the and structures of the RNA-dependent RNA polymerase of virus the structures of two crystal forms of HCV polymerase genotype 2a have been determined. two forms to and of the of the structural and crystal of the be with the crystal the and to be the The of the to in the the at the

Récupéré en direct depuis OpenAlex et désinversé. Les résumés ne sont pas conservés dans cette base de données : les index inversés représentent 8,6 Go des 9,3 Go de texte de la base, et le serveur dispose de 13 Go libres.

Prédiction distillée sur la base complète

Imitation des enseignants

Ni prévalence calibrée, ni vérité terrain. Validation humaine à venir. Apprise à partir de 10 348 étiquettes directes de Codex et de 10 348 étiquettes directes de Gemma. Le mode candidate est l'union des têtes enseignantes seuillées; le consensus est leur intersection. Ces sorties portent le statut machine_predicted_unvalidated et ne sont ni des étiquettes humaines ni des étiquettes directes de modèles de pointe.

score de la tête « metaresearch » (Codex)0,000
score de la tête « metaresearch » (Gemma)0,000
Version: codex-gemma-dda1882f352aStatut de validation: machine_predicted_unvalidated
Catégories candidatesaucune
Catégories consensuellesaucune
DomaineSignal candidat: aucune · Signal consensuel: aucune
Devis d'étudeSignal candidat: Expérimental (laboratoire) · Signal consensuel: Expérimental (laboratoire)
GenreSignal candidat: Empirique · Signal consensuel: Empirique
Score de désaccord entre enseignants0,004
Score d'incertitude au seuil0,358

Scores Codex et Gemma par catégorie

CatégorieCodexGemma
Métarecherche0,0000,000
Méta-épidémiologie (sens strict)0,0000,000
Méta-épidémiologie (sens large)0,0000,000
Bibliométrie0,0000,000
Études des sciences et des technologies0,0000,000
Communication savante0,0000,000
Science ouverte0,0000,000
Intégrité de la recherche0,0000,000
Charge utile insuffisante (le modèle a refusé de juger)0,0000,000

Scores machine (provisoires)

Les deux têtes enseignantes du modèle étudiant, lues sur ce travail. Un score ordonne la base pour la relecture; il n'affirme jamais une catégorie, et le statut de validation accompagne chaque rangée tel quel.

Scores de référence d'un modèle non mature (critères de maturité non atteints, 7 itérations). Un score ordonne; il n'affirme jamais une catégorie.

Tête enseignante Opus0,014
Tête enseignante GPT0,274
Écart entre enseignants0,260 · la distance entre les deux têtes enseignantes sur ce seul travail
Statut de validationscore_only:v0-immature-baseline · tel quel depuis la passe de notation : score_only signifie que le nombre peut ordonner les travaux, et qu'aucune étiquette de catégorie n'en découle