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Enregistrement W2084908219 · doi:10.1074/jbc.m100189200

Determination of the Complete Amino Acid Sequence for the Coat Protein of Brome Mosaic Virus by Time-of-Flight Mass Spectrometry

2001· article· en· W2084908219 sur OpenAlexaff
Yi‐Min She, Steve Haber, Dallas L. Seifers, Alexander Loboda, Igor V. Chernushevich, Hélène Perreault, Werner Ens, Kenneth G. Standing

Notice bibliographique

RevueJournal of Biological Chemistry · 2001
Typearticle
Langueen
DomaineAgricultural and Biological Sciences
ThématiquePlant Virus Research Studies
Établissements canadiensAgriculture and Agri-Food CanadaUniversity of Manitoba
Organismes subventionnairesNational Institute of General Medical Sciences
Mots-clésBrome mosaic virusElectrospray ionizationPeptide sequenceMass spectrometryComplementary DNAChemistryAmino acidProtein mass spectrometryTime-of-flight mass spectrometryBiologyMolecular biologyChromatographyBiochemistryIonizationRNAGeneIon

Résumé

récupéré en direct d'OpenAlex

Time-of-flight mass spectrometry (TOFMS) has been applied to determine the complete coat protein amino acid sequences of a number of distinct brome mosaic virus (BMV) isolates. Ionization was carried out by both electrospray ionization and matrix-assisted laser desorption/ionization (MALDI). After determining overall coat protein masses, the proteins were digested with trypsin or Lys-C proteinases, and the digestion products were analyzed a mass of the coat protein was to the amino acid was to the of the the amino acid were the were coat protein sequences were with the by a the of a virus the the complete of coat protein sequences to the sequences and the Time-of-flight mass spectrometry (TOFMS) has been applied to determine the complete coat protein amino acid sequences of a number of distinct brome mosaic virus (BMV) isolates. Ionization was carried out by both electrospray ionization and matrix-assisted laser desorption/ionization (MALDI). After determining overall coat protein masses, the proteins were digested with trypsin or Lys-C proteinases, and the digestion products were analyzed a mass of the coat protein was to the amino acid was to the of the the amino acid were the were coat protein sequences were with the by a the of a virus the the complete of coat protein sequences to the sequences and the electrospray ionization brome mosaic virus coat protein matrix-assisted laser desorption/ionization mass spectrometry the a virus the mass and the amino acid of the coat been by a the and of proteins mass by amino acid sequences the been acid sequences of to by the to a complete of the coat protein the of electrospray ionization and matrix-assisted laser desorption/ionization of mass mass spectrometry a and virus coat protein sequences of the and the of of the and and of the and and of the and and of the and of the mass of the coat protein carried out with of a a of to coat proteins of or of the virus of the and by the protein with and the digestion products by the of the protein sequences with acid and the the amino acid mass spectrometry a by mass and to with the of a by a mass the of and the of amino acid sequences protein applied to a number of of the of has and and to the by and coat protein amino acid the with and to and of to and of to has the of and to the of of brome mosaic virus (BMV) of the and the of the coat protein of virus by mass spectrometry (TOFMS) of the and and the complete amino acid sequences of of and of the and and of the and and of the and to isolates. of to the by or of applied to virus a of of brome mosaic virus virus the of the and of and the and was of the to the of and has been and and and to of of the and of the protein the coat proteins of the the of the coat protein of the the acid of the and the of a number of the coat proteins carried out a of and digestion of the to the the of the coat protein was acid was the mass and a mass the the protein was to of and the to of the the of of amino of the and were the and and the the of the Lys-C were carried and the of the were by mass and the with the to the of the and and of the and and of and the were a the and mass the mass of the with the a was by the of a complete of with a complete of of the the the the of with of the coat protein of the the isolates. to the to determine the complete coat protein sequences of the of a Lys-C of the coat were by the mass and the by the of of the of a Lys-C of the coat was carried out a mass with with was the of a Lys-C of the coat protein by and of the of the a mass of the by the of the by the acid of the of the the of coat protein mass and the of with the with the of the of both and and and the with the mass of and the to with the overall mass a of and by the of and with a of the acid to with the the mass and and the to and of the and and of the and a with of the has the of the the the the was a Lys-C digestion of were analyzed the mass to both and has a mass the the with the mass to the of and digested by Lys-C of the Lys-C digested coat protein by a was the mass of the the of or of and the the and the with was and by the and of the of the to of the with the to with the the of or the with the to a of the acid to or were the of the of and the of the has been to the by the acid has been to the by the acid has been to the by the acid has been to the by the acid has been to the by the acid has been to the by the acid has been to the by the acid has been to the by the acid has been to the by the acid has been to the by the acid has been to the by the acid has been to the by the acid has been to the by the acid has been to the by the acid has been to the by the acid has been to the by the acid has been to the by the acid has been to the by the acid has been to the by the acid has been to the by the acid has been to the by the acid has been to the by the acid has been to the by the acid has been to the by the acid has been to the by the acid has been to the by the acid a overall mass of of by and a the of to a mass of the mass of mass of was by a of the the the to mass by with a mass has a mass of of the the has been the both or were a of to the and the mass were to or of the mass with the the the to the mass of a of the coat of the with mass mass of the by the overall of the and of of the the with mass a with mass a of the of the of the and to and the of the with the the the mass and with a has to a of to the acid of of the the with mass a of to a of of of a virus by a a to by a the coat protein a of the the been the virus was the mass was the the was was virus distinct the of to the the a mass a of to or was by mass and by the mass of by a were were carried out the mass mass the to the the coat protein of was the was to to to sequences to and a by mass spectrometry a of to by a acid to protein of mass was the of the the was by the the mass was the of the the was by the the a the was to the were was a of the After was and the virus the protein of a and a of the was to of was was protein were the of to the mass was a mass to of of the analyzed isolates. of a Lys-C was to with the to of the of and was by a of to a to the to was was to with to the to the mass the the the overall and to After the of by the of were the was to to and the a virus the mass and the amino acid of the coat been by a the and of proteins mass by amino acid sequences the been acid sequences of to by the to a complete of the coat protein the of electrospray ionization and matrix-assisted laser desorption/ionization of mass mass spectrometry a and virus coat protein sequences of the and the of of the and and of the and and of the and and of the and of the mass of the coat protein carried out with of a a of to coat proteins of or of the virus of the and by the protein with and the digestion products by the of the protein sequences with acid and the the amino acid mass spectrometry a by mass and to with the of a by a mass the of and the of amino acid sequences protein applied to a number of of the of has and and to the by and coat protein amino acid the with and to and of to and of to has the of and to the of of brome mosaic virus (BMV) of the and the of the coat protein of virus by mass spectrometry (TOFMS) of the and and the complete amino acid sequences of of and of the and and of the and and of the and to isolates. of to the by or of applied to virus a of of brome mosaic virus virus the of the and of and the and was of the to the of and has been and and and to of of the and of the protein the coat proteins of the the of the coat protein of the the acid of the and the of a number of the coat proteins carried out a of and digestion of the to the the the protein was to of and the to of the the of of amino of the and were the and and the the of the Lys-C were carried and the of the were by mass and the with the to the of the and and of the and and of and the were a the and mass the mass of the with the a was by the of a complete of with a complete of of the the the the of with of the coat protein of the the isolates. to the to determine the complete coat protein sequences of the of a Lys-C of the coat were by the mass and the by the of of the of a Lys-C of the coat was carried out a mass with with was the of a Lys-C of the coat protein by and of the of the a mass of the by the of the by the acid of the of the the of coat protein mass and the of with the with the of the of both and and and the with the mass of and the to with the overall mass a of and by the of and with a of the acid to with the the mass and and the to and of the and and of the and a with of the has the of the the the the was a Lys-C digestion of were analyzed the mass to both and has a mass the the with the mass to the of and digested by Lys-C of the Lys-C digested coat protein by a was the mass of the the of or of and the the and the with was and by the and of the of the to of the with the to with the the of or the with the to a of the acid to or were the of the of and the of the has been to the by the acid has been to the by the acid has been to the by the acid has been to the by the acid has been to the by the acid has been to the by the acid has been to the by the acid has been to the by the acid has been to the by the acid has been to the by the acid has been to the by the acid has been to the by the acid has been to the by the acid has been to the by the acid has been to the by the acid has been to the by the acid has been to the by the acid has been to the by the acid has been to the by the acid has been to the by the acid has been to the by the acid has been to the by the acid has been to the by the acid has been to the by the acid has been to the by the acid has been to the by the acid a overall mass of of by and a the of to a mass of the mass of mass of was by a of the the the to mass by with a mass has a mass of of the the has been the both or were a of to the and the mass were to or of the mass with the the the to the mass of a of the coat of the with mass mass of the by the overall of the and of of the the with mass a with mass a of the of the of the and to and the of the with the the the mass and with a has to a of to the acid of of the the with mass a of to a of of of a virus by a a to by a the coat protein a of the the been the virus was the mass was the the was was virus distinct the of to the the a mass a of to or was by mass and by the mass of by a were were carried out the mass mass the to the the coat protein of was the was to to to sequences to and a by mass spectrometry a of to by a acid to protein of mass was the of the the was by the the mass was the of the the was by the the a the was to the were was a of the After was and the virus the protein of a and a of the was to of was was protein were the of to the mass was a mass to of of the analyzed isolates. of a Lys-C was to with the to of the of and was by a of to a to the to was was to with to the to the mass the the the overall and to After the of by the of were the was to to and of the and of the protein the coat proteins of the the of the coat protein of the the acid of the and the of a number of the coat proteins carried out a of and digestion of the to the the the protein was to of and the to of the the of of amino of the and were the and and the the of the Lys-C were carried and the of the were by mass and the with the to the of the and and of the and and of and the were a the and mass the mass of the with the a was by the of a complete of with a complete of of the the the the of with of the coat protein of the the isolates. to the to determine the complete coat protein sequences of the of a Lys-C of the coat was carried out a mass with with was the of a Lys-C of the coat protein by and of the of the a mass of the by the of the by the acid and of the protein the coat proteins of the the of the coat protein of the the acid of the and the of a number of the coat proteins carried out a of and digestion of the to the the isolates. the protein was to of and the to of the the of of amino of the and were the and and the the of the Lys-C were carried and the of the were by mass and the with the to the of the and and of the and and of and the were a the and mass the mass of the with the a was by the of a complete of with a complete of of the the the the of with of the coat protein of the the isolates. to the to determine the complete coat protein sequences of the of the of the the of coat protein mass and the of with the with the of the of both and and and the with the mass of and the to with the overall mass a of and by the of and with a of the acid to with the the mass and and the to and of the and and of the and a with of the has the of the the the the was a Lys-C digestion of were analyzed the mass to both and has a mass the the with the mass to of the Lys-C digested coat protein by a was the mass of the the of or of and the the and the with was and by the and of the of the 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was the was to to to sequences to and a by mass spectrometry a of to by a acid to protein of mass was the of the the was by the the mass was the of the the was by the the a the was to the were was a of the After was and the virus the protein of a and a of the was to of was was protein were the of to the mass was a mass to of of the analyzed isolates. of a Lys-C was to with the to of the of and was by a of to a to the to was was to with to the to the mass the the the overall and to After the of by the of were the was to to and of a virus by a a to by a the coat protein a of the the been the virus was the mass was the the was was virus distinct the of to the the a mass a of to or was by mass and by the coat protein of was the was to to to sequences to and a by mass spectrometry a of to by a acid to the was to the were was a of the After was and the virus the protein of a and a of the was to of was was protein were the of to the mass was a mass to of of the analyzed isolates. of a Lys-C was to with the to of the of and was by a of to a to the to was was to with to the to the mass the the the overall and to After the of by the of were the was to to and and the and and the and of virus

Récupéré en direct depuis OpenAlex et désinversé. Les résumés ne sont pas conservés dans cette base de données : les index inversés représentent 8,6 Go des 9,3 Go de texte de la base, et le serveur dispose de 13 Go libres.

Comment cette classification a été obtenuedéplier

Prédiction distillée sur la base complète

Imitation des enseignants

Ni prévalence calibrée, ni vérité terrain. Validation humaine à venir. Apprise à partir de 10 348 étiquettes directes de Codex et de 10 348 étiquettes directes de Gemma. Le mode candidate est l'union des têtes enseignantes seuillées; le consensus est leur intersection. Ces sorties portent le statut machine_predicted_unvalidated et ne sont ni des étiquettes humaines ni des étiquettes directes de modèles de pointe.

score de la tête « metaresearch » (Codex)0,000
score de la tête « metaresearch » (Gemma)0,001
Version: codex-gemma-dda1882f352aStatut de validation: machine_predicted_unvalidated
Catégories candidatesaucune
Catégories consensuellesaucune
DomaineSignal candidat: aucune · Signal consensuel: aucune
Devis d'étudeSignal candidat: Expérimental (laboratoire) · Signal consensuel: Expérimental (laboratoire)
GenreSignal candidat: Empirique · Signal consensuel: Empirique
Score de désaccord entre enseignants0,006
Score d'incertitude au seuil0,149

Scores Codex et Gemma par catégorie

CatégorieCodexGemma
Métarecherche0,0000,001
Méta-épidémiologie (sens strict)0,0000,000
Méta-épidémiologie (sens large)0,0000,000
Bibliométrie0,0000,000
Études des sciences et des technologies0,0000,000
Communication savante0,0000,000
Science ouverte0,0010,000
Intégrité de la recherche0,0000,000
Charge utile insuffisante (le modèle a refusé de juger)0,0000,000

Scores machine (provisoires)

Les deux têtes enseignantes du modèle étudiant, lues sur ce travail. Un score ordonne la base pour la relecture; il n'affirme jamais une catégorie, et le statut de validation accompagne chaque rangée tel quel.

Scores de référence d'un modèle non mature (critères de maturité non atteints, 7 itérations). Un score ordonne; il n'affirme jamais une catégorie.

Tête enseignante Opus0,058
Tête enseignante GPT0,273
Écart entre enseignants0,215 · la distance entre les deux têtes enseignantes sur ce seul travail
Statut de validationscore_only:v0-immature-baseline · tel quel depuis la passe de notation : score_only signifie que le nombre peut ordonner les travaux, et qu'aucune étiquette de catégorie n'en découle

Classification

machine, non validée

Prédiction automatique; un appel candidat d’une seule tête enseignante, pas un consensus.

Les modèles n’ont appliqué aucune catégorie : rien dans la taxonomie ne correspondait à ce travail.
Devis d'étudeExpérimental (laboratoire)
Domainenon disponible
GenreEmpirique

Le détail, modèle par modèle et score par score, se trouve en fin de page sous « Comment cette classification a été obtenue ».

En bref

Citations36
Publié2001
Routes d'admission1
Résumé présentoui

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