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Enregistrement W4210581274 · doi:10.1016/j.cegh.2022.100974

The outbreak of Delta Plus variant: The notorious and novel strain of SARS-CoV-2

2022· article· en· W4210581274 sur OpenAlexaboutno aff
Fahmida Tasnim Richi, Safaet Alam, Firoj Ahmed, A.S.M. Monjur Al-Hossain

Notice bibliographique

RevueClinical Epidemiology and Global Health · 2022
Typearticle
Langueen
DomaineMedicine
ThématiqueSARS-CoV-2 and COVID-19 Research
Établissements canadiensnon disponible
Organismes subventionnairesnon disponible
Mots-clésOutbreakSevere acute respiratory syndrome coronavirus 2 (SARS-CoV-2)VirologyCoronavirus disease 2019 (COVID-19)2019-20 coronavirus outbreakStrain (injury)Sars virusBiologyMedicineInfectious disease (medical specialty)

Résumé

récupéré en direct d'OpenAlex

The first appearance of COVID-19 from Wuhan, China, has now showed up with changed variants, resulting in millions of fatalities, billions of job losses, and remarkable economic damage by spreading across the world. It has been consistently evolved into more severe categories with its newfangled and fast-spreading mutant variants while entering its second year. Among its eleven variants (Alpha, Beta, Gamma, Delta, Delta Plus, Epsilon, Eta, Theta, Iota, Kappa, and Lambda), recently Delta Plus variant is becoming the dominant version of this pandemic right after Delta variant.1Malabadi R.B. Kolkar K.P. Meti N.T. Chalannavar R.K. Outbreak of coronavirus (SARS-CoV-2) Delta variant (B. 1.617. 2) and Delta plus (AY. 1) with fungal infections, mucormycosis: herbal medicine treatment.Int J Res Sci Innov. 2021 June; 8: 59-70https://doi.org/10.51244/ijrsi.2021.8603Crossref Google Scholar,2Kannan S.R. Spratt A.N. Cohen A.R. et al.Evolutionary analysis of the Delta and Delta plus variants of the SARS-CoV-2 viruses.J Autoimmun. 2021 Nov 1; 124: 102715https://doi.org/10.1016/j.jaut.2021.102715Crossref PubMed Scopus (74) Google Scholar On 22nd September, three cases of this variant in Mizoram, India has been reported.3Three cases of Delta plus variant reported from Mizoram.NDTV. 2021; ([Internet]. Available from:)https://www.ndtv.com/india-news/three-cases-of-delta-plus-variant-reported-from-mizoram-2549058Date accessed: October 20, 2021Google Scholar From the Maharashtra, Kerala and Madhya Pradesh states, India,1Malabadi R.B. Kolkar K.P. Meti N.T. Chalannavar R.K. Outbreak of coronavirus (SARS-CoV-2) Delta variant (B. 1.617. 2) and Delta plus (AY. 1) with fungal infections, mucormycosis: herbal medicine treatment.Int J Res Sci Innov. 2021 June; 8: 59-70https://doi.org/10.51244/ijrsi.2021.8603Crossref Google Scholar it is about to invade neighboring states and has been outspread to overseas like the USA, Canada, UK, Russia, Japan, Portugal, Poland, Turkey, Nepal and Switzerland. The number of infections by the Delta Plus variant in these cases is less, but it is viable enough to trigger the 3rd wave of COVID-19 in near future.4Roy B. Roy H. The Delta Plus variant of COVID-19: will it be the worst nightmare in the SARS-CoV-2 pandemic?.J Biomed Sci. 2021 Jul 16; 8: 1-2https://doi.org/10.3126/jbs.v8i1.38449Crossref Google Scholar Public Health England on its June 11 bulletin reported first about Delta plus variant with its six genomes from India as of June 7.5Hindustan Times What is the difference between Covid's Delta and Delta Plus variants?.https://www.hindustantimes.com/india-news/what-is-the-difference-between-covid-s-delta-variant-and-delta-plus-variant-101624435169704.htmlDate: 2021Date accessed: January 14, 2022Google Scholar It has been identified as B.1.617.2.1, or AY.1/2 which is a mutated type of more aggressive B.1.617.2, or ‘Delta’ variant with black fungus.1Malabadi R.B. Kolkar K.P. Meti N.T. Chalannavar R.K. Outbreak of coronavirus (SARS-CoV-2) Delta variant (B. 1.617. 2) and Delta plus (AY. 1) with fungal infections, mucormycosis: herbal medicine treatment.Int J Res Sci Innov. 2021 June; 8: 59-70https://doi.org/10.51244/ijrsi.2021.8603Crossref Google Scholar Between these two types (“AY.1” and “AY.2”) of Delta Plus variant, “AY.1″ has been spread worldwide, whereas “AY.2″ is the dominant category in the United States and has been detected 150 times.4Roy B. Roy H. The Delta Plus variant of COVID-19: will it be the worst nightmare in the SARS-CoV-2 pandemic?.J Biomed Sci. 2021 Jul 16; 8: 1-2https://doi.org/10.3126/jbs.v8i1.38449Crossref Google Scholar K417 N mutation on the SARS-CoV-2 spike protein was developed by AY.1 strain which interacts with the ACE2 receptor causing the invasion of human cells.6Upadhyay S, Kumar A, Kumar P, Dubey PK, Tripathi A, Ali A, et al. Delta plus variant with neutral mutation is less virulent compared to wild type SARS-CoV2. ResearchSquare. doi: 10.21203/rs.3.rs-805496/v1.Google Scholar Within the Delta and Delta Plus variants, scientists discovered a total of 656 and 269 specific alterations, respectively. A total of five critical alterations (A222V, T95I, R158G, G142D, and K417 N) have been reported as more common in the Delta Plus than in the Delta version. Besides, the presence of V70F and W258L spike protein alterations (at 52% and 39%, respectively), prevalent only in the Delta plus variant also distinguishes it from the Delta variant. Moreover, in Delta Plus and Delta variant, A222V was 58% and only 9%, respectively while the prevalence of T95I mutation is 37% and 22% in Delta Plus and Delta variant respectively.2Kannan S.R. Spratt A.N. Cohen A.R. et al.Evolutionary analysis of the Delta and Delta plus variants of the SARS-CoV-2 viruses.J Autoimmun. 2021 Nov 1; 124: 102715https://doi.org/10.1016/j.jaut.2021.102715Crossref PubMed Scopus (74) Google Scholar According to some reports, Delta Plus, the latest variant has exerted a higher affinity for the mucosal lining of the lungs than all other previously reported variants.4Roy B. Roy H. The Delta Plus variant of COVID-19: will it be the worst nightmare in the SARS-CoV-2 pandemic?.J Biomed Sci. 2021 Jul 16; 8: 1-2https://doi.org/10.3126/jbs.v8i1.38449Crossref Google Scholar According to INSACOG, the AY.1 strain demonstrated higher transmissibility, better binding affinity to receptors of the lungs’ mucosal linings along with a potentially lower response to anti-COVID-19 monoclonal antibodies including Imdevimab, Casirivimab etc.1Malabadi R.B. Kolkar K.P. Meti N.T. Chalannavar R.K. Outbreak of coronavirus (SARS-CoV-2) Delta variant (B. 1.617. 2) and Delta plus (AY. 1) with fungal infections, mucormycosis: herbal medicine treatment.Int J Res Sci Innov. 2021 June; 8: 59-70https://doi.org/10.51244/ijrsi.2021.8603Crossref Google Scholar As a result, it can be assumed to be less susceptible to the current vaccination program and/or therapeutical interventions.1Malabadi R.B. Kolkar K.P. Meti N.T. Chalannavar R.K. Outbreak of coronavirus (SARS-CoV-2) Delta variant (B. 1.617. 2) and Delta plus (AY. 1) with fungal infections, mucormycosis: herbal medicine treatment.Int J Res Sci Innov. 2021 June; 8: 59-70https://doi.org/10.51244/ijrsi.2021.8603Crossref Google Scholar,4Roy B. Roy H. The Delta Plus variant of COVID-19: will it be the worst nightmare in the SARS-CoV-2 pandemic?.J Biomed Sci. 2021 Jul 16; 8: 1-2https://doi.org/10.3126/jbs.v8i1.38449Crossref Google Scholar Prior studies on the Beta type revealed that mutations on K417 position aided in the dodging of antibody and so, K417 mutation on Delta Plus variant can also exert similar outcomes, such as evading vaccines and antibodies.4Roy B. Roy H. The Delta Plus variant of COVID-19: will it be the worst nightmare in the SARS-CoV-2 pandemic?.J Biomed Sci. 2021 Jul 16; 8: 1-2https://doi.org/10.3126/jbs.v8i1.38449Crossref Google Scholar In addition, the vaccination program in India with the BBV152 (Covaxin) has failed to exhibit promising outcomes against the Delta Plus variant.7Yadav P.D. Sahay R.R. Sapkal G. et al.Comparable Neutralization of SARS-CoV-2 Delta AY. 1 and Delta in Individuals Sera Vaccinated with BBV152. bioRxiv.2021 Jan 1Google Scholar However, according to a Washington Post investigation, the Delta Plus variant affects the younger people most, though the preliminary researches have also revealed that antibodies from vaccinated people were still effective against this variant.8Mahase E. Covid-19: where are we on vaccines and variants?.BMJ. 2021; 372: n597https://doi.org/10.1136/bmj.n597Crossref PubMed Scopus (55) Google Scholar To recapitulate, as a novel strain, the Delta Plus variant demands extensive research and exploration for the discovery and development of advanced therapeutics to fight against this notorious pandemic. The authors declare that they have no competing interests.

Récupéré en direct depuis OpenAlex et désinversé. Les résumés ne sont pas conservés dans cette base de données : les index inversés représentent 8,6 Go des 9,3 Go de texte de la base, et le serveur dispose de 13 Go libres.

Comment cette classification a été obtenuedéplier

Prédiction distillée sur la base complète

Imitation des enseignants

Ni prévalence calibrée, ni vérité terrain. Validation humaine à venir. Apprise à partir de 10 348 étiquettes directes de Codex et de 10 348 étiquettes directes de Gemma. Le mode candidate est l'union des têtes enseignantes seuillées; le consensus est leur intersection. Ces sorties portent le statut machine_predicted_unvalidated et ne sont ni des étiquettes humaines ni des étiquettes directes de modèles de pointe.

score de la tête « metaresearch » (Codex)0,017
score de la tête « metaresearch » (Gemma)0,008
Version: codex-gemma-dda1882f352aStatut de validation: machine_predicted_unvalidated
Catégories candidatesaucune
Catégories consensuellesaucune
DomaineSignal candidat: aucune · Signal consensuel: aucune
Devis d'étudeSignal candidat: Observationnel · Signal consensuel: Observationnel
GenreSignal candidat: Empirique · Signal consensuel: Empirique
Score de désaccord entre enseignants0,261
Score d'incertitude au seuil0,995

Scores Codex et Gemma par catégorie

CatégorieCodexGemma
Métarecherche0,0170,008
Méta-épidémiologie (sens strict)0,0000,000
Méta-épidémiologie (sens large)0,0010,000
Bibliométrie0,0000,000
Études des sciences et des technologies0,0000,002
Communication savante0,0000,000
Science ouverte0,0000,000
Intégrité de la recherche0,0000,001
Charge utile insuffisante (le modèle a refusé de juger)0,0000,000

Scores machine (provisoires)

Les deux têtes enseignantes du modèle étudiant, lues sur ce travail. Un score ordonne la base pour la relecture; il n'affirme jamais une catégorie, et le statut de validation accompagne chaque rangée tel quel.

Scores de référence d'un modèle non mature (critères de maturité non atteints, 7 itérations). Un score ordonne; il n'affirme jamais une catégorie.

Tête enseignante Opus0,214
Tête enseignante GPT0,521
Écart entre enseignants0,307 · la distance entre les deux têtes enseignantes sur ce seul travail
Statut de validationscore_only:v0-immature-baseline · tel quel depuis la passe de notation : score_only signifie que le nombre peut ordonner les travaux, et qu'aucune étiquette de catégorie n'en découle

Classification

machine, non validée

Prédiction automatique; un appel candidat d’une seule tête enseignante, pas un consensus.

Les modèles n’ont appliqué aucune catégorie : rien dans la taxonomie ne correspondait à ce travail.
Devis d'étudeObservationnel
Domainenon disponible
GenreEmpirique

Le détail, modèle par modèle et score par score, se trouve en fin de page sous « Comment cette classification a été obtenue ».

En bref

Citations5
Publié2022
Routes d'admission1
Résumé présentoui

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