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Record W4210581274 · doi:10.1016/j.cegh.2022.100974

The outbreak of Delta Plus variant: The notorious and novel strain of SARS-CoV-2

2022· article· en· W4210581274 on OpenAlexaboutno aff
Fahmida Tasnim Richi, Safaet Alam, Firoj Ahmed, A.S.M. Monjur Al-Hossain

Bibliographic record

VenueClinical Epidemiology and Global Health · 2022
Typearticle
Languageen
FieldMedicine
TopicSARS-CoV-2 and COVID-19 Research
Canadian institutionsnot available
Fundersnot available
KeywordsOutbreakSevere acute respiratory syndrome coronavirus 2 (SARS-CoV-2)VirologyCoronavirus disease 2019 (COVID-19)2019-20 coronavirus outbreakStrain (injury)Sars virusBiologyMedicineInfectious disease (medical specialty)

Abstract

fetched live from OpenAlex

The first appearance of COVID-19 from Wuhan, China, has now showed up with changed variants, resulting in millions of fatalities, billions of job losses, and remarkable economic damage by spreading across the world. It has been consistently evolved into more severe categories with its newfangled and fast-spreading mutant variants while entering its second year. Among its eleven variants (Alpha, Beta, Gamma, Delta, Delta Plus, Epsilon, Eta, Theta, Iota, Kappa, and Lambda), recently Delta Plus variant is becoming the dominant version of this pandemic right after Delta variant.1Malabadi R.B. Kolkar K.P. Meti N.T. Chalannavar R.K. Outbreak of coronavirus (SARS-CoV-2) Delta variant (B. 1.617. 2) and Delta plus (AY. 1) with fungal infections, mucormycosis: herbal medicine treatment.Int J Res Sci Innov. 2021 June; 8: 59-70https://doi.org/10.51244/ijrsi.2021.8603Crossref Google Scholar,2Kannan S.R. Spratt A.N. Cohen A.R. et al.Evolutionary analysis of the Delta and Delta plus variants of the SARS-CoV-2 viruses.J Autoimmun. 2021 Nov 1; 124: 102715https://doi.org/10.1016/j.jaut.2021.102715Crossref PubMed Scopus (74) Google Scholar On 22nd September, three cases of this variant in Mizoram, India has been reported.3Three cases of Delta plus variant reported from Mizoram.NDTV. 2021; ([Internet]. Available from:)https://www.ndtv.com/india-news/three-cases-of-delta-plus-variant-reported-from-mizoram-2549058Date accessed: October 20, 2021Google Scholar From the Maharashtra, Kerala and Madhya Pradesh states, India,1Malabadi R.B. Kolkar K.P. Meti N.T. Chalannavar R.K. Outbreak of coronavirus (SARS-CoV-2) Delta variant (B. 1.617. 2) and Delta plus (AY. 1) with fungal infections, mucormycosis: herbal medicine treatment.Int J Res Sci Innov. 2021 June; 8: 59-70https://doi.org/10.51244/ijrsi.2021.8603Crossref Google Scholar it is about to invade neighboring states and has been outspread to overseas like the USA, Canada, UK, Russia, Japan, Portugal, Poland, Turkey, Nepal and Switzerland. The number of infections by the Delta Plus variant in these cases is less, but it is viable enough to trigger the 3rd wave of COVID-19 in near future.4Roy B. Roy H. The Delta Plus variant of COVID-19: will it be the worst nightmare in the SARS-CoV-2 pandemic?.J Biomed Sci. 2021 Jul 16; 8: 1-2https://doi.org/10.3126/jbs.v8i1.38449Crossref Google Scholar Public Health England on its June 11 bulletin reported first about Delta plus variant with its six genomes from India as of June 7.5Hindustan Times What is the difference between Covid's Delta and Delta Plus variants?.https://www.hindustantimes.com/india-news/what-is-the-difference-between-covid-s-delta-variant-and-delta-plus-variant-101624435169704.htmlDate: 2021Date accessed: January 14, 2022Google Scholar It has been identified as B.1.617.2.1, or AY.1/2 which is a mutated type of more aggressive B.1.617.2, or ‘Delta’ variant with black fungus.1Malabadi R.B. Kolkar K.P. Meti N.T. Chalannavar R.K. Outbreak of coronavirus (SARS-CoV-2) Delta variant (B. 1.617. 2) and Delta plus (AY. 1) with fungal infections, mucormycosis: herbal medicine treatment.Int J Res Sci Innov. 2021 June; 8: 59-70https://doi.org/10.51244/ijrsi.2021.8603Crossref Google Scholar Between these two types (“AY.1” and “AY.2”) of Delta Plus variant, “AY.1″ has been spread worldwide, whereas “AY.2″ is the dominant category in the United States and has been detected 150 times.4Roy B. Roy H. The Delta Plus variant of COVID-19: will it be the worst nightmare in the SARS-CoV-2 pandemic?.J Biomed Sci. 2021 Jul 16; 8: 1-2https://doi.org/10.3126/jbs.v8i1.38449Crossref Google Scholar K417 N mutation on the SARS-CoV-2 spike protein was developed by AY.1 strain which interacts with the ACE2 receptor causing the invasion of human cells.6Upadhyay S, Kumar A, Kumar P, Dubey PK, Tripathi A, Ali A, et al. Delta plus variant with neutral mutation is less virulent compared to wild type SARS-CoV2. ResearchSquare. doi: 10.21203/rs.3.rs-805496/v1.Google Scholar Within the Delta and Delta Plus variants, scientists discovered a total of 656 and 269 specific alterations, respectively. A total of five critical alterations (A222V, T95I, R158G, G142D, and K417 N) have been reported as more common in the Delta Plus than in the Delta version. Besides, the presence of V70F and W258L spike protein alterations (at 52% and 39%, respectively), prevalent only in the Delta plus variant also distinguishes it from the Delta variant. Moreover, in Delta Plus and Delta variant, A222V was 58% and only 9%, respectively while the prevalence of T95I mutation is 37% and 22% in Delta Plus and Delta variant respectively.2Kannan S.R. Spratt A.N. Cohen A.R. et al.Evolutionary analysis of the Delta and Delta plus variants of the SARS-CoV-2 viruses.J Autoimmun. 2021 Nov 1; 124: 102715https://doi.org/10.1016/j.jaut.2021.102715Crossref PubMed Scopus (74) Google Scholar According to some reports, Delta Plus, the latest variant has exerted a higher affinity for the mucosal lining of the lungs than all other previously reported variants.4Roy B. Roy H. The Delta Plus variant of COVID-19: will it be the worst nightmare in the SARS-CoV-2 pandemic?.J Biomed Sci. 2021 Jul 16; 8: 1-2https://doi.org/10.3126/jbs.v8i1.38449Crossref Google Scholar According to INSACOG, the AY.1 strain demonstrated higher transmissibility, better binding affinity to receptors of the lungs’ mucosal linings along with a potentially lower response to anti-COVID-19 monoclonal antibodies including Imdevimab, Casirivimab etc.1Malabadi R.B. Kolkar K.P. Meti N.T. Chalannavar R.K. Outbreak of coronavirus (SARS-CoV-2) Delta variant (B. 1.617. 2) and Delta plus (AY. 1) with fungal infections, mucormycosis: herbal medicine treatment.Int J Res Sci Innov. 2021 June; 8: 59-70https://doi.org/10.51244/ijrsi.2021.8603Crossref Google Scholar As a result, it can be assumed to be less susceptible to the current vaccination program and/or therapeutical interventions.1Malabadi R.B. Kolkar K.P. Meti N.T. Chalannavar R.K. Outbreak of coronavirus (SARS-CoV-2) Delta variant (B. 1.617. 2) and Delta plus (AY. 1) with fungal infections, mucormycosis: herbal medicine treatment.Int J Res Sci Innov. 2021 June; 8: 59-70https://doi.org/10.51244/ijrsi.2021.8603Crossref Google Scholar,4Roy B. Roy H. The Delta Plus variant of COVID-19: will it be the worst nightmare in the SARS-CoV-2 pandemic?.J Biomed Sci. 2021 Jul 16; 8: 1-2https://doi.org/10.3126/jbs.v8i1.38449Crossref Google Scholar Prior studies on the Beta type revealed that mutations on K417 position aided in the dodging of antibody and so, K417 mutation on Delta Plus variant can also exert similar outcomes, such as evading vaccines and antibodies.4Roy B. Roy H. The Delta Plus variant of COVID-19: will it be the worst nightmare in the SARS-CoV-2 pandemic?.J Biomed Sci. 2021 Jul 16; 8: 1-2https://doi.org/10.3126/jbs.v8i1.38449Crossref Google Scholar In addition, the vaccination program in India with the BBV152 (Covaxin) has failed to exhibit promising outcomes against the Delta Plus variant.7Yadav P.D. Sahay R.R. Sapkal G. et al.Comparable Neutralization of SARS-CoV-2 Delta AY. 1 and Delta in Individuals Sera Vaccinated with BBV152. bioRxiv.2021 Jan 1Google Scholar However, according to a Washington Post investigation, the Delta Plus variant affects the younger people most, though the preliminary researches have also revealed that antibodies from vaccinated people were still effective against this variant.8Mahase E. Covid-19: where are we on vaccines and variants?.BMJ. 2021; 372: n597https://doi.org/10.1136/bmj.n597Crossref PubMed Scopus (55) Google Scholar To recapitulate, as a novel strain, the Delta Plus variant demands extensive research and exploration for the discovery and development of advanced therapeutics to fight against this notorious pandemic. The authors declare that they have no competing interests.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.017
metaresearch head score (Gemma)0.008
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: Observational
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.261
Threshold uncertainty score0.995

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0170.008
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0010.000
Bibliometrics0.0000.000
Science and technology studies0.0000.002
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.001
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.214
GPT teacher head0.521
Teacher spread0.307 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

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Citations5
Published2022
Admission routes1
Has abstractyes

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