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Enregistrement W4312219557 · doi:10.1093/ofid/ofac648

Environmental Surface Contamination With Monkeypox Virus in the Ambulatory Setting in Toronto, Canada

2022· article· en· W4312219557 sur OpenAlexafffundabout
Sharon Sukhdeo, Matthew Muller, Allison McGeer, Jerome A. Leis, Adrienne K Chan, Jonathan B. Gubbay, Samir Patel, Saman Khan, Stephen Perusini, Xinliu Angel Li, Robert Kozak, Sharmistha Mishra, Darrell H. S. Tan, Christopher Kandel

Notice bibliographique

RevueOpen Forum Infectious Diseases · 2022
Typearticle
Langueen
DomaineImmunology and Microbiology
ThématiquePoxvirus research and outbreaks
Établissements canadiensPublic Health OntarioHealth Sciences CentreSunnybrook Health Science CentreSinai Health SystemSt. Michael's HospitalToronto East General HospitalUniversity of Toronto
Organismes subventionnairesUniversity of Toronto
Mots-clésMonkeypoxMedicineContaminationAmbulatoryVirologyEnvironmental healthVeterinary medicineInternal medicineEcologyBiology

Résumé

récupéré en direct d'OpenAlex

To theEditor—While transmission of monkeypox virus (MPXV) primarily occurs through direct contact, fomite transmission via environmental surfaces has been suspected in healthcare-associated infections [1–4]. We assessed the presence of MPXV on environmental surfaces in outpatient clinics where adults with confirmed MPXV infection were evaluated. We conducted environmental sampling based on a convenience sample of adults (age ≥18 years) with MPXV infection attending 1 of 3 hospital-based, outpatient clinics in Toronto, Ontario between July and August 2022, during their first visit and up to 3 visits per patient. Following each clinical encounter, specimens were collected from a surface with the highest exposure to patient skin (exam table cover; referred to as “patient-high-touch”), a surface touched by both patient and healthcare worker hands (chair arms, doorknob, computer table; referred to as “shared-hand-high-touch”), and a no-touch surface (top of the door jamb; referred to as “no-touch”) before and after cleaning using hospital-grade disinfectant wipes (Cavi-Wipes, Metrex Corp, USA; Clorox Healthcare Bleach Disinfecting Wipes, CloroxPro, USA; Oxivir Wipes, Diversey, USA). A nylon swab (eSwab, COPAN), premoistened with universal transport media (UTM, COPAN), was used to swab a 100-cm2 surface (or entire surface if smaller area) while rotating the swab continuously. Swabs were placed in an empty collection tube, stored at 4°C, and transported to the study laboratory within 24 hours, where 3 mL of UTM was added and the sample vortexed before aliquoting. All samples were tested for MPXV at the Public Health Ontario Laboratory as previously described [3]. A cycle threshold (Ct) value for the G2R gene of MPXV or a clade 3–specific region of G2R ≤38 was considered detectable, 38.01–39.99 indeterminate, and ≥40 undetectable. The proportion of detectable MPVX before and after cleaning was compared using a χ2 test. In total, 162 samples were collected after 27 clinic visits of 18 participants. All participants were cisgender men; median age was 38 years (range, 29–60 years) and median time from symptom onset to clinic visit with environmental sampling was 30 days (range, 8–66 days). The number of cutaneous lesions present on the day of environmental sampling was available for 20 of 27 (75%); 11 of 20 (55%) had 1–9 lesions, 5 of 20 (25%) had 10–24 lesions, and 4 of 20 (20%) had ≥25 lesions. Before cleaning, MPXV was detected in 26 of 81 (32%) environmental swabs from 18 of 27 (67%) visits representing 12 of 18 (67%) participants. Of these 26 positive swabs, 12 of 26 (46%) were patient-high-touch, 13 of 26 (50%) were shared-hand-high-touch, and 1 of 26 (4%) were on no-touch surfaces (Figure 1). After cleaning, 7 of 81 (9%) swabs had detectable MPXV, 23% fewer (95% confidence interval, 10%–37%; P < .001). These included 5 of 26 (19%) surfaces yielding MPXV DNA before cleaning and 2 of 55 (4%) from which MPXV DNA had been undetectable: 2 patient-high-touch, 4 shared-hand-high-touch, and 1 no-touch. In each surface that was positive before and after cleaning, Ct values were consistently higher after cleaning. Cycle threshold (Ct) values for monkeypox virus (MPXV) G2R gene DNA before and after cleaning of patient-high-touch, patient and healthcare worker (HCW) shared-hand-high-touch, and no-touch environmental surfaces from outpatient clinics where individuals with monkeypox were assessed. Participants with 1 visit are represented by a black dot while those with >1 visit are represented by a unique color. The horizontal lines depict the Ct values for detectable (≤38), indeterminate (38.01–39.99), and undetectable (≥40) results. MPXV DNA was detected at low concentrations on high-touch surfaces from examination rooms after outpatient monkeypox visits. However, our findings suggest that commonly used hospital-grade cleaning wipes reduce environmental contamination, usually to undetectable levels. This level of disinfection may be adequate in most clinic settings, although more intensive cleaning may be required to consistently achieve undetectable levels. The long duration from symptom onset to environmental sampling among this cohort may underestimate environmental contamination compared to earlier in the disease course. In settings where exposure to persons shedding virus has been prolonged, such as the home or during a hospital admission, it may be prudent to disinfect surfaces more meticulously [4, 5]. Multiple surfaces with detectable MPXV DNA have also been identified in rooms of hospitalized patients with MPXV infection [5]. Viral culture to detect viable virus, especially for samples with high Ct values, and assessing for the presence of MPXV in outpatient settings earlier in the course of infection and in the home are needed to further inform the role of fomite transmission of MPXV infections. Patient consent. Written informed consent was obtained for every patient. The research ethics board at each participating institution approved the design of the study. Financial support. This study was funded by a grant from the Emerging and Pandemic Infections Consortium, Temerty Faculty of Medicine, University of Toronto. D. H. S. T. is supported by a Tier 2 Canada Research Chair in HIV Prevention and STI Research. S. M. is supported by a Tier 2 Canada Research Chair in Mathematical Modeling and Program Science.

Récupéré en direct depuis OpenAlex et désinversé. Les résumés ne sont pas conservés dans cette base de données : les index inversés représentent 8,6 Go des 9,3 Go de texte de la base, et le serveur dispose de 13 Go libres.

Comment cette classification a été obtenuedéplier

Prédiction machine sur la base complète

Imitation des enseignants

Ni prévalence calibrée, ni vérité terrain. Validation humaine à venir. Le volet Gemma est une étiquette directe du modèle pour chaque travail de la base, lue sur la notice réduite au titre. Le volet Codex est un classifieur appris des 10 348 étiquettes directes de Codex et calibré sur les taux pondérés de l'échantillon; les champs sans appui suffisant ne portent aucun appel Codex. Le mode candidate est l'union des deux volets; le consensus est leur intersection. Ces sorties portent le statut machine_predicted_unvalidated et ne sont pas des étiquettes humaines.

score de la tête « metaresearch » (Codex)0,000
score de la tête « metaresearch » (Gemma)0,001
Version: metacan-v3-hybrid-931329e0061cStatut de validation: machine_predicted_unvalidated
Catégories candidatesaucune
Catégories consensuellesaucune
DomaineSignal candidat: aucune · Signal consensuel: aucune
Devis d'étudeSignal candidat: Observationnel · Signal consensuel: Observationnel
GenreSignal candidat: Empirique · Signal consensuel: Empirique
Score de désaccord entre enseignants0,019
Score d'incertitude au seuil0,134

Scores du classifieur distillé par catégorie (deux têtes)

CatégorieCodexGemma
Métarecherche0,0000,001
Méta-épidémiologie (sens strict)0,0000,000
Méta-épidémiologie (sens large)0,0000,000
Bibliométrie0,0010,001
Études des sciences et des technologies0,0030,001
Communication savante0,0010,000
Science ouverte0,0010,001
Intégrité de la recherche0,0000,001
Charge utile insuffisante (le modèle a refusé de juger)0,0020,000

Scores machine (provisoires)

Les deux têtes enseignantes du modèle étudiant, lues sur ce travail. Un score ordonne la base pour la relecture; il n'affirme jamais une catégorie, et le statut de validation accompagne chaque rangée tel quel.

Scores de référence d'un modèle non mature (critères de maturité non atteints, 7 itérations). Un score ordonne; il n'affirme jamais une catégorie.

Tête enseignante Opus0,005
Tête enseignante GPT0,227
Écart entre enseignants0,223 · la distance entre les deux têtes enseignantes sur ce seul travail
Statut de validationscore_only:v0-immature-baseline · tel quel depuis la passe de notation : score_only signifie que le nombre peut ordonner les travaux, et qu'aucune étiquette de catégorie n'en découle

Classification

machine, non validée

Prédiction automatique; un appel candidat d’une seule source (Gemma direct ou Codex distillé), pas un consensus.

Les modèles n’ont appliqué aucune catégorie : rien dans la taxonomie ne correspondait à ce travail.
Devis d'étudeObservationnel
Domainenon disponible
GenreEmpirique

Le détail, modèle par modèle et score par score, se trouve en fin de page sous « Comment cette classification a été obtenue ».

En bref

Citations4
Publié2022
Routes d'admission3
Résumé présentoui

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