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Record W4312219557 · doi:10.1093/ofid/ofac648

Environmental Surface Contamination With Monkeypox Virus in the Ambulatory Setting in Toronto, Canada

2022· article· en· W4312219557 on OpenAlexafffundabout
Sharon Sukhdeo, Matthew Muller, Allison McGeer, Jerome A. Leis, Adrienne K Chan, Jonathan B. Gubbay, Samir Patel, Saman Khan, Stephen Perusini, Xinliu Angel Li, Robert Kozak, Sharmistha Mishra, Darrell H. S. Tan, Christopher Kandel

Bibliographic record

VenueOpen Forum Infectious Diseases · 2022
Typearticle
Languageen
FieldImmunology and Microbiology
TopicPoxvirus research and outbreaks
Canadian institutionsPublic Health OntarioHealth Sciences CentreSunnybrook Health Science CentreSinai Health SystemSt. Michael's HospitalToronto East General HospitalUniversity of Toronto
FundersUniversity of Toronto
KeywordsMonkeypoxMedicineContaminationAmbulatoryVirologyEnvironmental healthVeterinary medicineInternal medicineEcologyBiology

Abstract

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To theEditor—While transmission of monkeypox virus (MPXV) primarily occurs through direct contact, fomite transmission via environmental surfaces has been suspected in healthcare-associated infections [1–4]. We assessed the presence of MPXV on environmental surfaces in outpatient clinics where adults with confirmed MPXV infection were evaluated. We conducted environmental sampling based on a convenience sample of adults (age ≥18 years) with MPXV infection attending 1 of 3 hospital-based, outpatient clinics in Toronto, Ontario between July and August 2022, during their first visit and up to 3 visits per patient. Following each clinical encounter, specimens were collected from a surface with the highest exposure to patient skin (exam table cover; referred to as “patient-high-touch”), a surface touched by both patient and healthcare worker hands (chair arms, doorknob, computer table; referred to as “shared-hand-high-touch”), and a no-touch surface (top of the door jamb; referred to as “no-touch”) before and after cleaning using hospital-grade disinfectant wipes (Cavi-Wipes, Metrex Corp, USA; Clorox Healthcare Bleach Disinfecting Wipes, CloroxPro, USA; Oxivir Wipes, Diversey, USA). A nylon swab (eSwab, COPAN), premoistened with universal transport media (UTM, COPAN), was used to swab a 100-cm2 surface (or entire surface if smaller area) while rotating the swab continuously. Swabs were placed in an empty collection tube, stored at 4°C, and transported to the study laboratory within 24 hours, where 3 mL of UTM was added and the sample vortexed before aliquoting. All samples were tested for MPXV at the Public Health Ontario Laboratory as previously described [3]. A cycle threshold (Ct) value for the G2R gene of MPXV or a clade 3–specific region of G2R ≤38 was considered detectable, 38.01–39.99 indeterminate, and ≥40 undetectable. The proportion of detectable MPVX before and after cleaning was compared using a χ2 test. In total, 162 samples were collected after 27 clinic visits of 18 participants. All participants were cisgender men; median age was 38 years (range, 29–60 years) and median time from symptom onset to clinic visit with environmental sampling was 30 days (range, 8–66 days). The number of cutaneous lesions present on the day of environmental sampling was available for 20 of 27 (75%); 11 of 20 (55%) had 1–9 lesions, 5 of 20 (25%) had 10–24 lesions, and 4 of 20 (20%) had ≥25 lesions. Before cleaning, MPXV was detected in 26 of 81 (32%) environmental swabs from 18 of 27 (67%) visits representing 12 of 18 (67%) participants. Of these 26 positive swabs, 12 of 26 (46%) were patient-high-touch, 13 of 26 (50%) were shared-hand-high-touch, and 1 of 26 (4%) were on no-touch surfaces (Figure 1). After cleaning, 7 of 81 (9%) swabs had detectable MPXV, 23% fewer (95% confidence interval, 10%–37%; P < .001). These included 5 of 26 (19%) surfaces yielding MPXV DNA before cleaning and 2 of 55 (4%) from which MPXV DNA had been undetectable: 2 patient-high-touch, 4 shared-hand-high-touch, and 1 no-touch. In each surface that was positive before and after cleaning, Ct values were consistently higher after cleaning. Cycle threshold (Ct) values for monkeypox virus (MPXV) G2R gene DNA before and after cleaning of patient-high-touch, patient and healthcare worker (HCW) shared-hand-high-touch, and no-touch environmental surfaces from outpatient clinics where individuals with monkeypox were assessed. Participants with 1 visit are represented by a black dot while those with >1 visit are represented by a unique color. The horizontal lines depict the Ct values for detectable (≤38), indeterminate (38.01–39.99), and undetectable (≥40) results. MPXV DNA was detected at low concentrations on high-touch surfaces from examination rooms after outpatient monkeypox visits. However, our findings suggest that commonly used hospital-grade cleaning wipes reduce environmental contamination, usually to undetectable levels. This level of disinfection may be adequate in most clinic settings, although more intensive cleaning may be required to consistently achieve undetectable levels. The long duration from symptom onset to environmental sampling among this cohort may underestimate environmental contamination compared to earlier in the disease course. In settings where exposure to persons shedding virus has been prolonged, such as the home or during a hospital admission, it may be prudent to disinfect surfaces more meticulously [4, 5]. Multiple surfaces with detectable MPXV DNA have also been identified in rooms of hospitalized patients with MPXV infection [5]. Viral culture to detect viable virus, especially for samples with high Ct values, and assessing for the presence of MPXV in outpatient settings earlier in the course of infection and in the home are needed to further inform the role of fomite transmission of MPXV infections. Patient consent. Written informed consent was obtained for every patient. The research ethics board at each participating institution approved the design of the study. Financial support. This study was funded by a grant from the Emerging and Pandemic Infections Consortium, Temerty Faculty of Medicine, University of Toronto. D. H. S. T. is supported by a Tier 2 Canada Research Chair in HIV Prevention and STI Research. S. M. is supported by a Tier 2 Canada Research Chair in Mathematical Modeling and Program Science.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.001
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: Observational
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.019
Threshold uncertainty score0.134

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.001
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0010.001
Science and technology studies0.0030.001
Scholarly communication0.0010.000
Open science0.0010.001
Research integrity0.0000.001
Insufficient payload (model declined to judge)0.0020.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.005
GPT teacher head0.227
Teacher spread0.223 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

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Citations4
Published2022
Admission routes3
Has abstractyes

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