Fast Screening of Tuberculosis Patients Based on Analysis of Plasma by Infrared Spectroscopy Coupled with Machine Learning Approaches
Notice bibliographique
Résumé
High Resolution Image Download MS PowerPoint Slide Prompt diagnosis of tuberculosis (TB) enables timely treatment, limiting spread and improving public health for this disease. Currently, a rapid, sensitive, accurate, and cost-effective detection of TB still remains a challenge. For this purpose, we engaged a transmission skill and an attenuated total reflectance (ATR) technique coupled with Fourier-transform infrared spectrometry (FTIR) to study the IR spectra of the plasma samples from TB patients ( n = 10) and healthy individuals ( n = 10). To ensure high-quality spectral data, spectra were collected in both transmission and ATR modes, with each measurement consisting of 256 scans at a resolution of 8 cm –1 . For the transmission mode, measurements were repeated five times per sample, while ATR-FTIR measurements were repeated three times per sample. These parameters were carefully optimized through rigorous testing to achieve the highest possible signal-to-noise ratio for patient sample analysis. Using this method, we obtained a total of 100 spectra from 20 samples in the transmission mode and 60 spectra in the ATR-FTIR mode, ensuring sufficient data for robust spectral analysis. Further, we applied machine learning techniques to analyze and classify the IR spectra; by this means, we differentiated those spectra between TB patients and healthy ones. In this work, we modified the transmission-FTIR setup to improve the absorption sensitivity by focusing the IR light on the interface of the sample; while, we used a high-refractive-index crystal ZnSe as a medium to reflect the signals in ATR scheme. Routinely, we compared the spectra obtained from both methods; in their second derivative curves, we notified that there had distinct spectral differences in protein and lipid regions (3500–3000, 2900–2800, and 1700–1500 cm –1 ) between TB and healthy groups. Using three machine learning classifiers─Logistic Regression (LR), Random Forest (RF), and XGBoost (Xg)─we found that the Xg achieved an accuracy of 0.749, precision of 0.703, recall of 0.901, F1 score of 0.790, and an AUC of the ROC curve of 0.82 for absorption spectra in the 3500–2700 cm –1 region; additionally, the machine learning practice showed that ATR data possessed performance parameters of ∼ 80% in accuracy. We randomly assigned participants (rather than individual scans) to 80% training and 20% test sets to train and validate three machine learning models (LR, RF, and Xg). Based on the results, we concluded that the absorption spectroscopic method demonstrated its superior performance in TB diagnosis. Thus, we have showed that absorption-FTIR spectroscopy is a valuable tool for sorting the TB disease from patients. The spectral IR analysis of plasmas can complement clinical evidence and provides a rapid and accurate diagnosis of TB in clinic.
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Comment cette classification a été obtenuedéplier
Prédiction distillée sur la base complète
Imitation des enseignantsNi prévalence calibrée, ni vérité terrain. Validation humaine à venir. Apprise à partir de 10 348 étiquettes directes de Codex et de 10 348 étiquettes directes de Gemma. Le mode candidate est l'union des têtes enseignantes seuillées; le consensus est leur intersection. Ces sorties portent le statut machine_predicted_unvalidated et ne sont ni des étiquettes humaines ni des étiquettes directes de modèles de pointe.
Scores Codex et Gemma par catégorie
| Catégorie | Codex | Gemma |
|---|---|---|
| Métarecherche | 0,000 | 0,000 |
| Méta-épidémiologie (sens strict) | 0,000 | 0,000 |
| Méta-épidémiologie (sens large) | 0,000 | 0,000 |
| Bibliométrie | 0,000 | 0,001 |
| Études des sciences et des technologies | 0,000 | 0,000 |
| Communication savante | 0,000 | 0,000 |
| Science ouverte | 0,000 | 0,000 |
| Intégrité de la recherche | 0,000 | 0,000 |
| Charge utile insuffisante (le modèle a refusé de juger) | 0,000 | 0,000 |
Scores machine (provisoires)
Les deux têtes enseignantes du modèle étudiant, lues sur ce travail. Un score ordonne la base pour la relecture; il n'affirme jamais une catégorie, et le statut de validation accompagne chaque rangée tel quel.
Scores de référence d'un modèle non mature (critères de maturité non atteints, 7 itérations). Un score ordonne; il n'affirme jamais une catégorie.
score_only:v0-immature-baseline · tel quel depuis la passe de notation : score_only signifie que le nombre peut ordonner les travaux, et qu'aucune étiquette de catégorie n'en découleClassification
machine, non validéePrédiction automatique; un appel candidat d’une seule tête enseignante, pas un consensus.
Le détail, modèle par modèle et score par score, se trouve en fin de page sous « Comment cette classification a été obtenue ».