Phylogeny and classification of auctorum (Coleoptera: Carabidae:Pterostichini: )
Notice bibliographique
Résumé
ANNALS OF CARNEGIE MUSEUM 20 J uly 2008 V ol . 77, N umber 1, P p . 93–127 PHYLOGENY AND CLASSIFICATION OF HYPHERPES AUCTORUM (COLEOPTERA: CARABIDAE: PTEROSTICHINI: PTEROSTICHUS) K ipling W. W ill [Research Associate, Section of Invertebrate Zoology, Carnegie Museum of Natural History] 137 Mulford Hall, ESPM Department, Organisms & Environment Division, University of California, Berkeley, CA 94720 kiplingw@nature.berkeley.edu A man S. G ill Department of Ecology and Evolution, State University of New York at Stony Brook, 650 Life Sciences Building, Stony Brook, NY 11794-5245 amango@life.bio.sunysb.edu Abstract Based on an exemplar sample of pterostichine species (Carabidae: Pterostichini), 28S rDNA and COI and COII mtDNA sequence data are used to recon- struct a phylogenetic hypothesis for generic and subgeneric taxa putatively in or related to the subgenus Hypherpes Chaudoir (Coleoptera: Carabidae: Pterostichus Bonelli). The monophyly of Pterostichus is equivocal as the position of the subgenus Bothriopterus Chaudoir varies depending on methods of sequence alignment and gap region treatment. Pterostichus is found to be monophyletic in the combined data analysis if Cyclotrachelus Chaudoir and Tapinopterus Schaum are included in a larger concept of the genus. It is recommended that these be treated as subgenera of Pterostichus. Taxa currently included in Hypherpes are found to form a monophyletic group. No taxon previously suggested as a close relative of Hypherpes was found to be in, or closely related to Hypherpes. The sister-group of Hypherpes remains unclear, but there is some support for a clade of Pseudoferonina Ball + Cryobius Chaudoir as the adelphotaxon. Taxa included in current classifications of Hypherpes compose a group that is in fact a complex of Hypherpes sensu stricto and two other subgenera, Leptoferonia Casey and Anilloferonia Van Dyke, which have been treated as junior synonyms of Hypherpes. Our analyses show that these three taxa are well supported as subgenera and reciprocally monophyletic, with the only change to previous taxonomic concepts of included species being the transfer of Pterostichus rothi (Hatch) from Anilloferonia to Leptoferonia. It is recommended that all three of these subgenera be recognized rather than being subsumed under Hypherpes. In Leptoferonia the DNA data support all species groups that were established by Hacker using morphological characters, with the exception of the inopinus-group. Significant reduction of the compound eyes has occurred independently at least five and possibly seven times in the Hypherpes complex. As many as five separate instances of eye reduction may have occurred in Leptoferonia alone. Maddison’s concentrated changes test was used to show that there is a significant correlation between microphthalmy and autapomorphic sequence data as represented by longer than average terminal branch lengths based on Bayesian estimates of change per site. However, taxon pair contrasts show no consistent pattern of absolute difference of evolutionary rate or directionality of differences between small-eyed taxa and their sister species or sister clade. Repeated patterns of allopatric distributions are found for species-pairs of Leptoferonia, which consist of divisions along a north/south axis near the Pacific Coast and in the Sierra Nevada Range, or east/west divisions between coastal species and inland or Sierran species. In addition to allopatric biogeographic patterns, instances of sympatry in closely related species are interpreted to have been the result of two reduced-eye species moving into the deep litter and soil layer, thereby ecologically differentiating from near-surface leaf-litter and log dwelling species. Pterostichus morionides (Chaudoir), which is restricted to the Sierra Nevada Mountains in western North America, is found to be sister to P. adoxus (Say) and P. tristis (Dejean), the only spe- cies of Hypherpes in eastern North America. This grouping (mta-clade) was further tested by using a subset of taxa for 18S rDNA, CAD and wg sequence data and was found in some or all most-parsimonious trees for these data. In cases where they did not form a clade, they usually formed a convex group. Although counterintuitive due to the unusual disjunct biogeographic connection of these two areas and the generally dissimilar form of the adults, the mta-clade is very well supported by the DNA sequence data. K ey W ords : biogeography, eye reduction, ground beetles, Pterostichina Introduction Of the nearly 250 North American species of pterostichine ground beetles (Coleoptera: Carabidae: Pterostichini), about 100 (40%) are presently included in the subgenus Hypherpes Chaudoir (Bousquet and Larochelle 1993; Bousquet 1999), and recent discovery and description of species suggest that there remains a significant number of species yet to be named (Kavanaugh and LaBonte 2006; LaBonte 2006; Will 2007). All but two of the known spe- cies of Hypherpes are found in the region from Alaska to Baja California and east to New Mexico. The two re- maining species are found from Gerogia to southeastern Canada, west to Wisconsin and east to the Atlantic coastal states. The beetles typically recognized as Hypherpes are mostly large (10.0 mm and larger), conspicuous (Figs. 1A, 2), common, easily collected and potentially important predators in agricultural systems (e.g., Riddick and Mills 1994, 1995, 1996a, 1996b), and yet their fundamental tax- onomy and classification remains unsettled. This group is essentially the last species-rich group of large-sized ground beetles in North America that remains largely untouched by modern (post 1960) phylogeny-based revision. Much work was done by T. L. Casey (1913, 1918, 1924). Though significant, it is based on his implicit, peculiar and argu- ably flawed species concept. Regionally limited treatments have dealt with the relatively small number of species in the northern latitudes (Hatch 1953, Lindroth 1966), and a significant number of species-level synonymies have been established (Bousquet and Larochelle 1993; Bousquet 1999). One subgroup, Leptoferonia Casey, was revised by Hacker (1968). However, all of these authors have
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Comment cette classification a été obtenuedéplier
Prédiction distillée sur la base complète
Imitation des enseignantsNi prévalence calibrée, ni vérité terrain. Validation humaine à venir. Apprise à partir de 10 348 étiquettes directes de Codex et de 10 348 étiquettes directes de Gemma. Le mode candidate est l'union des têtes enseignantes seuillées; le consensus est leur intersection. Ces sorties portent le statut machine_predicted_unvalidated et ne sont ni des étiquettes humaines ni des étiquettes directes de modèles de pointe.
Scores Codex et Gemma par catégorie
| Catégorie | Codex | Gemma |
|---|---|---|
| Métarecherche | 0,000 | 0,000 |
| Méta-épidémiologie (sens strict) | 0,000 | 0,000 |
| Méta-épidémiologie (sens large) | 0,000 | 0,000 |
| Bibliométrie | 0,000 | 0,000 |
| Études des sciences et des technologies | 0,000 | 0,000 |
| Communication savante | 0,000 | 0,000 |
| Science ouverte | 0,000 | 0,000 |
| Intégrité de la recherche | 0,000 | 0,000 |
| Charge utile insuffisante (le modèle a refusé de juger) | 0,000 | 0,000 |
Scores machine (provisoires)
Les deux têtes enseignantes du modèle étudiant, lues sur ce travail. Un score ordonne la base pour la relecture; il n'affirme jamais une catégorie, et le statut de validation accompagne chaque rangée tel quel.
Scores de référence d'un modèle non mature (critères de maturité non atteints, 7 itérations). Un score ordonne; il n'affirme jamais une catégorie.
score_only:v0-immature-baseline · tel quel depuis la passe de notation : score_only signifie que le nombre peut ordonner les travaux, et qu'aucune étiquette de catégorie n'en découleClassification
machine, non validéePrédiction automatique; un appel candidat d’une seule tête enseignante, pas un consensus.
Le détail, modèle par modèle et score par score, se trouve en fin de page sous « Comment cette classification a été obtenue ».