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Record W901223072

Phylogeny and classification of auctorum (Coleoptera: Carabidae:Pterostichini: )

2008· article· en· W901223072 on OpenAlexaboutno aff
Kipling Will

Bibliographic record

VenueAnnals of Carnegie Museum · 2008
Typearticle
Languageen
FieldAgricultural and Biological Sciences
TopicColeoptera Taxonomy and Distribution
Canadian institutionsnot available
Fundersnot available
KeywordsSubgenusMonophylyTaxonBiologyGenusZoologyCladePhylogenetic treeEvolutionary biologyEcology
DOInot available

Abstract

fetched live from OpenAlex

ANNALS OF CARNEGIE MUSEUM 20 J uly 2008 V ol . 77, N umber 1, P p . 93–127 PHYLOGENY AND CLASSIFICATION OF HYPHERPES AUCTORUM (COLEOPTERA: CARABIDAE: PTEROSTICHINI: PTEROSTICHUS) K ipling W. W ill [Research Associate, Section of Invertebrate Zoology, Carnegie Museum of Natural History] 137 Mulford Hall, ESPM Department, Organisms & Environment Division, University of California, Berkeley, CA 94720 kiplingw@nature.berkeley.edu A man S. G ill Department of Ecology and Evolution, State University of New York at Stony Brook, 650 Life Sciences Building, Stony Brook, NY 11794-5245 amango@life.bio.sunysb.edu Abstract Based on an exemplar sample of pterostichine species (Carabidae: Pterostichini), 28S rDNA and COI and COII mtDNA sequence data are used to recon- struct a phylogenetic hypothesis for generic and subgeneric taxa putatively in or related to the subgenus Hypherpes Chaudoir (Coleoptera: Carabidae: Pterostichus Bonelli). The monophyly of Pterostichus is equivocal as the position of the subgenus Bothriopterus Chaudoir varies depending on methods of sequence alignment and gap region treatment. Pterostichus is found to be monophyletic in the combined data analysis if Cyclotrachelus Chaudoir and Tapinopterus Schaum are included in a larger concept of the genus. It is recommended that these be treated as subgenera of Pterostichus. Taxa currently included in Hypherpes are found to form a monophyletic group. No taxon previously suggested as a close relative of Hypherpes was found to be in, or closely related to Hypherpes. The sister-group of Hypherpes remains unclear, but there is some support for a clade of Pseudoferonina Ball + Cryobius Chaudoir as the adelphotaxon. Taxa included in current classifications of Hypherpes compose a group that is in fact a complex of Hypherpes sensu stricto and two other subgenera, Leptoferonia Casey and Anilloferonia Van Dyke, which have been treated as junior synonyms of Hypherpes. Our analyses show that these three taxa are well supported as subgenera and reciprocally monophyletic, with the only change to previous taxonomic concepts of included species being the transfer of Pterostichus rothi (Hatch) from Anilloferonia to Leptoferonia. It is recommended that all three of these subgenera be recognized rather than being subsumed under Hypherpes. In Leptoferonia the DNA data support all species groups that were established by Hacker using morphological characters, with the exception of the inopinus-group. Significant reduction of the compound eyes has occurred independently at least five and possibly seven times in the Hypherpes complex. As many as five separate instances of eye reduction may have occurred in Leptoferonia alone. Maddison’s concentrated changes test was used to show that there is a significant correlation between microphthalmy and autapomorphic sequence data as represented by longer than average terminal branch lengths based on Bayesian estimates of change per site. However, taxon pair contrasts show no consistent pattern of absolute difference of evolutionary rate or directionality of differences between small-eyed taxa and their sister species or sister clade. Repeated patterns of allopatric distributions are found for species-pairs of Leptoferonia, which consist of divisions along a north/south axis near the Pacific Coast and in the Sierra Nevada Range, or east/west divisions between coastal species and inland or Sierran species. In addition to allopatric biogeographic patterns, instances of sympatry in closely related species are interpreted to have been the result of two reduced-eye species moving into the deep litter and soil layer, thereby ecologically differentiating from near-surface leaf-litter and log dwelling species. Pterostichus morionides (Chaudoir), which is restricted to the Sierra Nevada Mountains in western North America, is found to be sister to P. adoxus (Say) and P. tristis (Dejean), the only spe- cies of Hypherpes in eastern North America. This grouping (mta-clade) was further tested by using a subset of taxa for 18S rDNA, CAD and wg sequence data and was found in some or all most-parsimonious trees for these data. In cases where they did not form a clade, they usually formed a convex group. Although counterintuitive due to the unusual disjunct biogeographic connection of these two areas and the generally dissimilar form of the adults, the mta-clade is very well supported by the DNA sequence data. K ey W ords : biogeography, eye reduction, ground beetles, Pterostichina Introduction Of the nearly 250 North American species of pterostichine ground beetles (Coleoptera: Carabidae: Pterostichini), about 100 (40%) are presently included in the subgenus Hypherpes Chaudoir (Bousquet and Larochelle 1993; Bousquet 1999), and recent discovery and description of species suggest that there remains a significant number of species yet to be named (Kavanaugh and LaBonte 2006; LaBonte 2006; Will 2007). All but two of the known spe- cies of Hypherpes are found in the region from Alaska to Baja California and east to New Mexico. The two re- maining species are found from Gerogia to southeastern Canada, west to Wisconsin and east to the Atlantic coastal states. The beetles typically recognized as Hypherpes are mostly large (10.0 mm and larger), conspicuous (Figs. 1A, 2), common, easily collected and potentially important predators in agricultural systems (e.g., Riddick and Mills 1994, 1995, 1996a, 1996b), and yet their fundamental tax- onomy and classification remains unsettled. This group is essentially the last species-rich group of large-sized ground beetles in North America that remains largely untouched by modern (post 1960) phylogeny-based revision. Much work was done by T. L. Casey (1913, 1918, 1924). Though significant, it is based on his implicit, peculiar and argu- ably flawed species concept. Regionally limited treatments have dealt with the relatively small number of species in the northern latitudes (Hatch 1953, Lindroth 1966), and a significant number of species-level synonymies have been established (Bousquet and Larochelle 1993; Bousquet 1999). One subgroup, Leptoferonia Casey, was revised by Hacker (1968). However, all of these authors have

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: Observational
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.398
Threshold uncertainty score0.200

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.098
GPT teacher head0.265
Teacher spread0.167 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

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Citations0
Published2008
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