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Associations between the 17q21 region and allergic rhinitis in five birth cohorts

2014· article· en· W1137578565 on OpenAlexaff
Elaine Fuertes, Cilla Söderhäll, Nathalie Acevedo, Allan B. Becker, Michael Bräuer, Moira Chan‐Yeung, F. Nicole Dijk, Joachim Heinrich, Gerard H. Koppelman, Dirkje S. Postma, Juha Kere, Anita L. Kozyrskyj, Göran Pershagen, ANDREW J. SANDFORD, Marie Standl, Carla M. T. Tiesler, Mélanie Waldenberger, Marit Westman, Christopher Carlsten, Erik Melén

Bibliographic record

VenueEuropean Respiratory Journal · 2014
Typearticle
Languageen
FieldMedicine
TopicAsthma and respiratory diseases
Canadian institutionsWomen and Children’s Health Research InstituteUniversity of AlbertaUniversity of ManitobaUniversity of British Columbia
Fundersnot available
KeywordsMedicineAsthmaSingle-nucleotide polymorphismConcomitantLocus (genetics)Linkage disequilibriumImmunologyInternal medicineGenotypeGeneticsGene

Abstract

fetched live from OpenAlex

Background: The 17q21 locus is among the most implicated genetic risk factors for childhood asthma, and may be a shared risk locus with allergic rhinitis. Previous candidate gene studies on the 17q21 locus and allergic rhinitis are small and conflicting. Objective: In a pooled analysis of five birth cohorts (BAMSE, GINI/LISA, PIAMA, CAPPS and SAGE; N total =4623), we examined whether seven single nucleotide polymorphisms (SNPs) located at 17q21 were associated with allergic rhinitis, and whether this association was modified in those also diagnosed with asthma. Methods: Allergic rhinitis was defined using a questionnaire-based report of doctor diagnosis or symptoms and a concomitant positive test for aeroallergen sensitization at ages four to 16 years (in the pooled data). Generalized estimating equation models, adjusted for age and cohort, assessed longitudinal associations between allergic rhinitis and the SNPs. We then evaluated associations for allergic rhinitis with and without concomitant asthma. Results: A significant longitudinal association between allergic rhinitis and rs7216389, previously implicated in genome-wide association studies on asthma, was observed (OR:1.17, 95%CI:[1.06, 1.29] with T as the effect allele). Four other SNPs in high linkage disequilibrium with rs7216389 and a fifth SNP were also associated. Associations appeared greatest for concomitant allergic rhinitis and asthma (1.35 [1.11, 1.63] for rs7216389:T), but were also observed for allergic rhinitis without concomitant asthma (1.12 [1.00, 1.24] for rs7216389:T). Conclusions: The results of this large study support the role of the 17q21 locus as a shared genetic susceptibility locus of allergic rhinitis and asthma.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.004
metaresearch head score (Gemma)0.004
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: Observational
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.019
Threshold uncertainty score0.038

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0040.004
Meta-epidemiology (narrow)0.0010.001
Meta-epidemiology (broad)0.0010.003
Bibliometrics0.0020.002
Science and technology studies0.0010.000
Scholarly communication0.0010.000
Open science0.0010.001
Research integrity0.0010.001
Insufficient payload (model declined to judge)0.0020.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.026
GPT teacher head0.264
Teacher spread0.238 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations2
Published2014
Admission routes1
Has abstractyes

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