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Record W114458179 · doi:10.1096/fasebj.20.5.lb117-a

Renal repair and regeneration: Study of a candidate gene HCaRG

2006· article· en· W114458179 on OpenAlexafffund
Carlos Hader, Sandra Tremblay, Nathalie Bourcier, Christian Croisetière, Nicolas Solban, Sergei N. Orlov, Pavel Hamet, Johanne Tremblay

Bibliographic record

VenueThe FASEB Journal · 2006
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicRenal and related cancers
Canadian institutionsMcGill UniversityHôtel-Dieu de Montréal
FundersCanadian Institutes of Health ResearchUniversité du Québec à Montréal
KeywordsCell biologyBiologyNephronRegeneration (biology)Microarray analysis techniquesMotilityGeneKidneyGene expressionHEK 293 cellsImmunocytochemistryMolecular biologyGeneticsEndocrinology

Abstract

fetched live from OpenAlex

Introduction An important process in renal regeneration after injury is the conversion of tubular cells to a migratory phenotype; surviving cells migrate to denuded areas, proliferate and differentiate in order to restore nephron structure and function. Beside its effect on renal cell proliferation and differentiation, our previous studies support a role for HCaRG (hypertension‐related calcium‐regulated gene) in the motile behavior increment of kidney cells. Results To better understand the evolvement of HCaRG in this phenomenon, we used the Yeast 2–hybrid technique to screen human kidney proteins that interact with HCaRG. Screening using HCaRG as bait revealed its interaction with β‐actin, Na + /K + ATPase and NKCC. This direct protein interaction was confirmed by several techniques, and their co‐localization at the leading edge of migrating cells was found by immunocytochemistry. This stimulatory effect of HCaRG on migration could be due to actin reorganisation coupled to ions transport activation. We produced two stable kidney cell lines (HEK293 and MDCK‐C7) overexpressing HCaRG to help us identify its function. We used oligonucleotide microarray analysis to determine changes in gene expression between HCaRG over expressing cells and their controls. Microarray results for selected genes were confirmed by quantitative RT‐PCR. HCaRG affects the expression of several genes implicated in cell motility. Conclusion A better comprehension of the mechanisms and molecular pathways involved in the functions of HCaRG will enable us to conceive better means of stimulating the regeneration of renal function after a lesion. Supported by CIHR.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.003
Threshold uncertainty score0.008

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0030.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.006
GPT teacher head0.220
Teacher spread0.214 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2006
Admission routes2
Has abstractyes

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