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CGI‐58 regulates triacylglycerol metabolism and lipid signaling pathways in plant cells

2012· article· en· W136241094 on OpenAlexaff
Sunjung Park, Satinder K. Gidda, Nicholas Khuu, Patrick J. Horn, Chris James, Kent D. Chapman, Robert T. Mullen, John M. Dyer

Bibliographic record

VenueThe FASEB Journal · 2012
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicLipid metabolism and biosynthesis
Canadian institutionsUniversity of Guelph
Fundersnot available
KeywordsPerilipinAdipose triglyceride lipaseLipid dropletLipid metabolismArabidopsisBiochemistryCell biologyChemistryBiologyLipaseGeneEnzymeAdipose tissueLipolysisMutant

Abstract

fetched live from OpenAlex

CGI‐58 (Comparative Gene Identification‐58) encodes an α/β hydrolase‐type protein that is involved in multiple aspects of lipid metabolism in mammals, including the breakdown of triacylglycerols (TAGs) and formation of the hydrophobic barrier of the skin. Mutations in CGI‐58 result not only in aberrant skin formation, but also in accumulation of lipid droplets (LDs) in non‐lipid‐storing tissues such as skin, liver, and blood cells. The activity of CGI‐58 is determined at least in part by its interaction with other proteins including perilipin, which serves to anchor CGI‐58 to the surface of LDs. Phosphorylation of perilipin releases CGI‐58 and allows it to interact with Adipose Triglyceride Lipase (ATGL), thereby stimulating TAG breakdown. Interestingly, disruption of the CGI‐58 homolog in Arabidopsis results also in the accumulation of LDs in tissues that do not normally store lipids (e.g., leaves and stems), but plants lack any apparent homologs to perilipin or ATGL. In an effort to better understand the function of CGI‐58 in plants, we conducted a yeast 2‐hybrid assay using Arabidopsis CGI‐58 as bait. Although we did not identify any obvious LD‐associated proteins or lipases, we did identify several proteins known to be involved in distinct aspects of plant lipid metabolism. Evidence will be presented showing that CGI‐58 modulates the level of linolenic acid as well as lipid signaling pathways in plant cells.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.001
Threshold uncertainty score0.008

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0010.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.001
Insufficient payload (model declined to judge)0.0010.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.015
GPT teacher head0.211
Teacher spread0.196 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2012
Admission routes1
Has abstractyes

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