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Record W141600936 · doi:10.1096/fasebj.21.6.a795-c

The proximal segments of the cytosolic C1 domain of adenylyl cyclase 6 localize to plasma membrane lipid rafts and caveolae

2007· article· en· W141600936 on OpenAlexaff
Muthusamy Thangavel, Xiaoqiu Liu, Rennolds S. Ostrom

Bibliographic record

VenueThe FASEB Journal · 2007
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicCaveolin-1 and cellular processes
Canadian institutionsChildren's Hospital Research Institute of Manitoba
Fundersnot available
KeywordsCaveolaeLipid raftCell biologyCaveolinImmunoprecipitationSphingolipidCytosolTransfectionChemistryBiologyBiochemistrySignal transductionEnzymeGene

Abstract

fetched live from OpenAlex

Lipid rafts, rich in cholesterol and sphingolipids, display a high concentration of signaling proteins such as receptors, G‐proteins, and effectors molecules including certain isoforms of adenylyl cyclases (AC). The mechanism by which AC6 is localized to lipid rafts or caveolae is unknown, but previous work indicates a role for the C1 domain. In this study, we constructed recombinant proteins that comprise the four segments of the C1 domain of human AC6. The proteins correspond to amino acids 306–387, 388–490, 491–589 and 590–692 of human AC6. We transfected each protein in cos‐7 cells, which express caveolin‐1, and assessed their localization via a fused GFP. Lipid rafts and caveolae were isolated from plasma membrane using a detergent‐based fractionation method and fractions were analyzed by immunoblotting. We also used co‐immunoprecipitation and immunoflurescence microscopy to identify the subcellular targeting to each expressed C1 domain fragment. We found that only proteins 306 and 388 were associated with lipid rafts, suggesting that these portions of AC6 play a role in its localization. Thus, certain structural elements responsible for AC6 localization in lipid rafts and caveolae appear to be contained in the proximal portion of the C1 domain. Supported AHA grant 0555291B.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.002
Threshold uncertainty score0.006

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.001
Insufficient payload (model declined to judge)0.0020.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.005
GPT teacher head0.223
Teacher spread0.218 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2007
Admission routes1
Has abstractyes

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Same venueThe FASEB JournalSame topicCaveolin-1 and cellular processesFrench-language works237,207