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Proteolytic Digestion Reveals Novel Insights into the Kv1.5 Structure‐Function Relationship

2015· article· en· W1442336858 on OpenAlexafffund
Andrew Hogan‐Cann, Shetuan Zhang

Bibliographic record

VenueThe FASEB Journal · 2015
Typearticle
Languageen
FieldMedicine
TopicCardiac electrophysiology and arrhythmias
Canadian institutionsQueen's University
FundersCanadian Institutes of Health ResearchHeart and Stroke Foundation of Canada
KeywordsProteasesChemistryPotassium channelCleavage (geology)Ion channelExtracellularBiophysicsCell biologyImmunoprecipitationBiochemistryBiologyReceptorEnzymeGene

Abstract

fetched live from OpenAlex

Atrial fibrillation (AF) is the most common form of cardiac arrhythmia. Kv1.5 channel mediated ultra‐rapidly activating delayed rectifier potassium current (I Kur ) is important for atrial repolarization. Since cardiac I Kur is expressed solely in the atria, therapies that target Kv1.5 represent promising strategies for treating AF. Pathologies linked to AF, such as ischemia and hypoxia, have been reported to activate various proteases. It has been shown that cell‐surface Kv1.5 channels are sensitive to cleavage by extracellular proteases, such as proteinase K (PK). In this study, we investigated the consequences of proteolytic digestion on Kv1.5 channels. Our data demonstrate that extracellularly applied PK cleaves mature (75 kDa) Kv1.5 channels at a single locus in the S1‐S2 linker, yielding two digestion products of 42 and 33 kDa, corresponding to the N‐ and C‐terminal fragments, respectively. Surprisingly, whole‐cell patch clamp analysis showed that I Kv1.5 was unaltered by the PK cut. Plasma membrane protein isolation via biotinylation indicated that both the N‐ and C‐terminal fragments following PK digestion retain cell‐surface expression over several hours. Co‐immunoprecipitation studies after PK cleavage indicate that the two fragments of the channel do not associate. The time‐dependent decline in the Kv1.5 fragment lacking the N‐terminus and the S1 domain paralleled the amplitude of recorded Kv1.5 currents. Our results suggest that Kv1.5 remains functional without the NH 2 ‐S1 portion of the channel. The resistance of I Kv1.5 to proteolytic cleavage may represent an inherent protective mechanism for Kv1.5 function. These findings extend our understanding of the Kv1.5 channel structure‐function relationship. Supported by CIHR & the Heart and Stroke Foundation

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.001
Threshold uncertainty score0.003

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.026
GPT teacher head0.261
Teacher spread0.235 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2015
Admission routes2
Has abstractyes

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