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Record W1480596487 · doi:10.1111/aab.12019

Characterisation of two wheat enolase <scp>cDNA</scp> showing distinct patterns of expression in leaf and crown tissues of plants exposed to low temperature

2013· article· en· W1480596487 on OpenAlexafffund
Pallavi Sharma, S. Ganeshan, Brian Fowler, Ravindra N. Chibbar

Bibliographic record

VenueAnnals of Applied Biology · 2013
Typearticle
Languageen
FieldAgricultural and Biological Sciences
TopicPlant Stress Responses and Tolerance
Canadian institutionsUniversity of Saskatchewan
FundersGenome Canada
KeywordsBiologyComplementary DNAEnolaseRapid amplification of cDNA endsGeneMolecular biologyGene expressionGeneticsMolecular cloning

Abstract

fetched live from OpenAlex

Abstract Seasonal low temperature ( LT ) adversely affects growth of plants. The onset of LT in temperate zones also entails the process of cold acclimation, preparing the plants to withstand freezing temperatures. During this process of cold acclimation a number of physiological, biochemical and molecular changes occur. A differentially expressed enolase gene in wheat plants exposed to LT was previously identified by cDNA ‐amplified fragment length polymorphism. In this study, two wheat enolase cDNA , TaENO ‐a and TaENO ‐b amplified by 5′,3′ rapid amplification of cDNA end ( RACE )‐ PCR (polymerase chain reaction), were isolated and characterised. Quantitative real‐time PCR ( QPCR ) was done to assess their expression patterns in leaf and crown tissues of wheat plants exposed to LT . BLAST searches and bioinformatic analyses were done to determine the structure, domains and phylogeny of the cloned sequences. The two cDNA sequences differed mostly in the 5′ and 3′ untranslated regions. Deduced amino acid sequence showed high identity to bacteria, yeast, fungi, human and plant enolases with conserved putative DNA ‐binding and repressor domains. A genomic clone containing 17 exons distributed over 4.5 kb structurally shared a high degree of similarity to rice enolase. QPCR revealed combined effects of LT and ageing on expression of TaENO ‐a and TaENO ‐b . Down‐regulation of TaENO ‐a was observed with age in the crown tissues upon exposure to LT , but in leaf initial up‐regulation was followed by down‐regulation. Expression of TaENO ‐b was similar to expression patterns previously reported for cold‐regulated ( COR ) genes in wheat, wherein the recessive vrnA ‐1 allele influenced its expression in the leaf and genetic background determines its expression in the crown.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.370
Threshold uncertainty score0.202

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.029
GPT teacher head0.259
Teacher spread0.229 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations7
Published2013
Admission routes2
Has abstractyes

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