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Record W1503263434 · doi:10.5772/22827

Natural Killer Cells from HIV Infected Slow Progressors Who Carry the Protective HLA-B*27 Allele and Inhibitory KIR3DL1 Receptors Have Elevated Poly-Functional Potential Compared to Bw6 Homozygotes

2011· book-chapter· en· W1503263434 on OpenAlexafffund
F. Nicole, Carlos E Melendez-Peña, Philomena Kamya, M. Christos, Mohamed‐Rachid Boulassel, Jean‐Pierre Routy, Réjean Thomas, Pierre Côté, Colin Kovacs, A. Stephen, Mark Connors, Martin Potter, Marianne Harris, L. Cecile

Bibliographic record

VenueInTech eBooks · 2011
Typebook-chapter
Languageen
FieldImmunology and Microbiology
TopicImmune Cell Function and Interaction
Canadian institutionsUniversity of British ColumbiaSt. Paul's HospitalMaple Leaf Medical ClinicRoyal Victoria HospitalMcGill UniversityCentre Hospitalier de l’Université de MontréalClinique Paro ExcellenceRoyal Victoria Regional Health CentreMcGill University Health Centre
FundersNational Institute of Allergy and Infectious DiseasesCanadian Institutes of Health Research
KeywordsAlleleHuman leukocyte antigenHuman immunodeficiency virus (HIV)ReceptorInhibitory postsynaptic potentialImmunologyBiologyVirologyGeneGeneticsAntigenEndocrinology

Abstract

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HIV Infection in the Era of Highly Active Antiretroviral Treatment and Some of Its Associated Complications 194Activation of NK cells is regulated through the integration of signals from a number of activating and inhibitory receptors (Lanier 2005).Many of the inhibitory receptors use major histocompatibility complex (MHC) class I or class I-like proteins as their ligands (Lanier 2005).The interaction between inhibitory NK receptors and their ligands during NK cell development is important in educating these cells for subsequent function and for avoiding reactivity to normal cells expressing self MHC class I (Kim et al. 1969;Anfossi et al. 2006).In humans one large family of NK receptors are encoded by the Killer Immunoglobulin-like Receptors (KIR) region that maps to chromosome 19q13.4(Lanier 2005).The most polymorphic locus among the KIR region genes is KIR3DL1, which encodes both inhibitory KIR3DL1 (3DL1) and activating KIR3DS1 (3DS1) alleles (Norman et al. 2007).3DL1 alleles can be further classified according to their expression levels on the cell surface into high (*h), low/intermediate (*l) and null (*004) (not cell surface expressed) alleles (Yawata et al. 2006;Norman et al. 2007;Gardiner et al. 2001;Pando et al. 2003).Genotypes homozygous for 3DL1 can be divided into 2 groups: *h/*y, where *y can be either another *h allele or *004 with no *l alleles, and *l/*x, where *x can be an *l, *x or *004 allele (Martin et al. 2007).3DL1 receptors recognize a subset of MHC class I HLA-B molecules known as Bw4.HLA-Bw4 differ from the remaining HLA-Bw6 antigens encoded at this locus, which do not interact with 3DL1, in the amino acids present between positions 77 and 83 of the HLA heavy chain (Wan et al. 1986).Bw4 allotypes with isoleucine at position 80 (Bw4*80I) have been reported to be better ligands for many of the 3DL1 alleles (Cella et al. 1994).However, there is evidence that Bw4 antigens with threonine at position 80 (Bw4*80T), particularly HLA-B*2705, interact strongly with certain 3DL1 receptors (Luque et al. 1996).Epidemiological studies have reported that several KIR/HLA combinations are associated with slower progression to AIDS and suppression of viral load (VL) (Martin et al. 2007).Compared to Bw6 homozygotes (hmz) the 3DL1/HLA-B combination having the most potent influence on slowing time to AIDS and VL control is 3DL1*h/*y with HLA-B*57 (*h/*y+B*57) (Martin et al. 2007).Previous work from our group showed that NK cells from individuals carrying this genotype combination demonstrated higher functional potential than those from carriers of either the NK receptor genotype or HLA-B*57 alone or from Bw6 hmz (Boulet et al. 2010).In these studies functional potential was defined as the percent contribution of NK cells secreting interferon-γ (IFNγ) and tumor necrosis factor-α (TNF-α) and expressing CD107a, a marker of degranulation to the total response to stimulation with the HLA devoid K562 cell line.Furthermore, NK cells from carriers of *h/*y+B*57 had higher functional potential than carriers of 3DL1*h/*y with other Bw4 alleles (Boulet et al. 2010).HLA-B*57 is an HLA antigen considered to be protective in the context of HIV infection (Kaslow, Dorak, and Tang 2005;Altfeld et al. 2003;Leslie et al. 2004;Carrington, Martin, and van Bergen 2008).While the protective effect conferred by HLA-B*57 is mediated at least in part through CD8 + T cell recognition of HIV epitopes restricted by this antigen, epidemiological studies and our results support the possibility that HLA-B*57's protective effect may also be mediated through its ability to educate NK cells for superior functional potential (Martin et al. 2002;Martin et al. 2007;Leslie et al. 2004;Miura et al. 2009;Leslie et al. 2005).Murine models have shown using single MHC class I transgenic mice that MHC class I molecules can differ from each other in the potency of their NK education signals, which directly translates into activation potency upon encountering cells lacking that MHC ligand (Brodin, Karre, and Hoglund 2009).Since NK cells from *h/*y+B*57 carriers had higher functional potential than carriers of 3DL1*h/*y with other Bw4 alleles, HLA-B*57 may be an www.intechopen.com

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.006
Threshold uncertainty score0.021

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.001
Insufficient payload (model declined to judge)0.0060.003

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.012
GPT teacher head0.202
Teacher spread0.190 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

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Citations0
Published2011
Admission routes2
Has abstractyes

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