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The QA repeat domain of TCERG1 mediates its inhibitory effect towards C/EBPα and the ability of TCERG1 to be relocalized in the nucleus (946.6)

2014· article· en· W1511460969 on OpenAlexaff
Sheng‐Pin Hsiao, Nikolai A. Timchenko, William J. Roesler

Bibliographic record

VenueThe FASEB Journal · 2014
Typearticle
Languageen
FieldMedicine
TopicTraumatic Brain Injury Research
Canadian institutionsUniversity of Saskatchewan
Fundersnot available
KeywordsTransactivationNucleusFunction (biology)Cell biologyChemistryBiologyMolecular biologyGeneticsGeneTranscription factor

Abstract

fetched live from OpenAlex

Previously we showed that TCERG1 inhibits the growth arrest and transactivation functions of C/EBPα, through a mechanism that requires the relocalization of TCERG1 to sites of C/EBPα occupancy in the nucleus. TCERG1 contains a unique QA repeat domain, for which no function has been assigned, as well as 3 WW domains within the N‐terminal half of TCERG1 which has been shown previously to mediate its relocalization. These domains were explored for their roles in mediating the inhibitory and relocalization activities of TCERG1. While mutations of the WW domains were without effect, deletion of the QA repeat domain in TCERG1 prevented its relocalization in the nucleus (assessed by confocal microscopy), and abrogated its ability to repress both the growth arrest and transactivation functions of C/EBPα. Reducing the number of QA repeats from 38 to 20 had no impact on the activities of TCERG1, while further reduction to 10 resulted in a significant loss of relocalization ability and inhibitory activity towards C/EBPα. Interestingly, deletion of the QA repeat domain did not alter the ability of TCERG1 to interact with C/EBPα in a co‐IP assay. Based on these data, we speculate that one function of the QA repeat domain is to allow relocalization of TCERG1 from its nuclear speckle compartment. (Note ‐ the first two authors contributed equally to this work)

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.002
Threshold uncertainty score0.007

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.001
Insufficient payload (model declined to judge)0.0020.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.028
GPT teacher head0.314
Teacher spread0.286 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2014
Admission routes1
Has abstractyes

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