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Novel role of the E26 transformation-specific transcription factor Spi-C for B cell development and function (IRM8P.703)

2014· article· en· W1519423271 on OpenAlexaff
Stephen Li, Rodney P. DeKoter

Bibliographic record

VenueThe Journal of Immunology · 2014
Typearticle
Languageen
FieldImmunology and Microbiology
TopicImmunotherapy and Immune Responses
Canadian institutionsChildren’s Health Research InstituteWestern University
Fundersnot available
KeywordsTranscription factorBiologyB cellCell biologyTransformation (genetics)Function (biology)GeneticsAntibodyGene

Abstract

fetched live from OpenAlex

Abstract Transcription factors of the E26 transformation-specific family are critically important for regulating B cell development and function. Spi-B and Spi-C are highly related E26 transformation-specific transcription factors that can bind to identical DNA sequences in the genome. Spib-/- mice have reduced follicular and increased marginal zone B cell frequencies compared to WT mice. Spib-/- B cells are defective in BCR signaling, and cannot generate T-dependent antibody responses. Spi-C is expressed in developing B cells, but its function in B cell development and function is not clear. To determine if Spi-B and Spi-C are functionally redundant, we generated mice that are germline knockout for Spib and heterozygous for Spic (Spib-/-Spic+/-). Spib-/-Spic-/- mice were not born, potentially due to embryonic lethality. Interestingly, Spib-/-Spic+/- mice had restored number of B cells in the spleen, including a rescue of follicular B cells, and had restored proliferative responses compared to Spib-/- mice. Transcripts of genes important for BCR signaling were rescued in sorted follicular Spib-/-Spic+/- B cells compared to Spib-/- B cells. These results suggest a novel role for Spi-C in opposing Spi-B in B cell development and function. These findings have important implications for understanding antibody forming responses, such as those seen in vaccinations.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.003
Threshold uncertainty score0.010

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0010.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.001
Scholarly communication0.0000.000
Open science0.0000.001
Research integrity0.0010.001
Insufficient payload (model declined to judge)0.0030.002

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.013
GPT teacher head0.199
Teacher spread0.186 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2014
Admission routes1
Has abstractyes

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