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Role of membrane contact sites in PM ‐ ER sterol transport (606.7)

2014· article· en· W1521669849 on OpenAlexaff
Yves Y. Sere, Jesper Johansen, Christopher Beh, Anant K. Menon

Bibliographic record

VenueThe FASEB Journal · 2014
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicFungal and yeast genetics research
Canadian institutionsSimon Fraser University
Fundersnot available
KeywordsEndoplasmic reticulumSterolSaccharomyces cerevisiaeLipid dropletCytoplasmCell biologyOrganelleErgosterolMembraneMembrane contact siteYeastChemistryVesicular transport proteinBiochemistryBiologyBiophysicsMembrane proteinVesicleCholesterol

Abstract

fetched live from OpenAlex

Intracellular trafficking of sterols occurs largely by non‐vesicular processes that are poorly understood. Cytoplasmic sterol transport proteins (STPs) are presumed to ferry sterols between membranes and this may be enhanced in regions where the participating membranes are closely apposed (membrane contact sites or MCSs). The major sterol trafficking pathway in the yeast Saccharomyces cerevisiae involves direct transfer between the endoplasmic reticulum (ER) and plasma membrane (PM). Yeast STPs have not been identified, although the cytoplasmic protein Kes1/Osh4 has been implicated in the phosphoinositide‐driven cycling of ergosterol between the ER and TGN. We considered whether MCSs between the ER and PM might play a role in sterol transport between the two organelles. We tested this hypothesis by analyzing sterol traffic in Saccharomyces cerevisiae cells that were largely devoid of ER ‐ PM contact sites (∆tether cells). We used fluorescence microscopy to track the retrograde movement of exogenously supplied dehydroergosterol (DHE) from the PM to the ER and lipid droplets, and high performance liquid chromatography to quantify, in parallel, the transport‐coupled formation of DHE esters. We found that sterol transport from PM to ER is unaffected in ∆tether cells. We are currently generating strains based on ∆tether cells in which all residual ER‐PM MCSs are eliminated, and also testing whether vesicular pathways might play a redundant role in the absence of MCSs.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.003
Threshold uncertainty score0.010

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0010.001
Open science0.0000.000
Research integrity0.0010.000
Insufficient payload (model declined to judge)0.0030.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.010
GPT teacher head0.245
Teacher spread0.235 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations2
Published2014
Admission routes1
Has abstractyes

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