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Direct isolation of untouched human neutrophils from whole blood in as little as 25 minutes (TECH2P.870)

2014· article· en· W1532161103 on OpenAlexaff
Nooshin Tabatabaei-Zavareh, Tim Le Fevre, Andy I. Kokaji, Karina L. McQueen, Maureen Fairhurst, Terry E. Thomas, Allen Eaves

Bibliographic record

VenueThe Journal of Immunology · 2014
Typearticle
Languageen
FieldImmunology and Microbiology
TopicNeutrophil, Myeloperoxidase and Oxidative Mechanisms
Canadian institutionsTerry Fox Research InstituteBC Cancer AgencyStemcell Technologies
Fundersnot available
KeywordsLysisCentrifugationCell sortingReceptorImmunomagnetic separationDifferential centrifugationPhagocytosisProinflammatory cytokineBiologyGranulocyteIsolation (microbiology)Whole bloodCell biologyImmunologyChemistryMicrobiologyMolecular biologyInflammationFlow cytometryBiochemistry

Abstract

fetched live from OpenAlex

Abstract Neutrophils are the first line of defense against microbial infections. They sense pathogen-associated molecular patterns through a wide range of receptors including toll-like receptors. Once activated, neutrophils eliminate infection via the phagocytosis of pathogens, releasing proinflammatory cytokines and antimicrobial peptides and producing reactive oxygen species (ROS). The procedures to enrich neutrophils from human whole blood involve at least two steps to remove red blood cells (RBCs) and unwanted leukocytes. For example, neutrophils may be separated from other leukocytes using density gradient centrifugation. However, they are still mixed with RBCs which are then lysed. Alternatively, RBCs are first depleted using lysis or sedimentation followed by fluorescence-activated cell sorting or magnetic cell separation to remove unwanted leukocytes. Here we describe a one-step immunomagnetic, column-free cell separation method which does NOT require RBC lysis, sedimentation or density gradient centrifugation. Non-neutrophils and RBCs are labeled with antibodies and cross-linked to magnetic particles. The labeled cells are removed using an EasySepTM magnet. The complete procedure takes 25-35 minutes. The purity of isolated neutrophils is 96±3% (n=14). The isolated neutrophils are functional and produce ROS upon activation with PMA. This fast isolation method of untouched, quiescent neutrophils facilitates the studies of neutrophil function in inflammatory diseases.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Methods · Consensus signal: none
Teacher disagreement score0.004
Threshold uncertainty score0.014

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0010.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0010.000
Research integrity0.0000.001
Insufficient payload (model declined to judge)0.0040.004

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.010
GPT teacher head0.233
Teacher spread0.223 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreMethods

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2014
Admission routes1
Has abstractyes

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