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Claudin 3 CRISPR Knockout Mice are Healthy and Fertile

2015· article· en· W1533037968 on OpenAlexaff
Jenessa Kerr, Jasmine El Andalousi, Yojiro Yamanaka, Aimee K. Ryan, Indra R. Gupta

Bibliographic record

VenueThe FASEB Journal · 2015
Typearticle
Languageen
FieldMedicine
TopicOrgan Donation and Transplantation
Canadian institutionsMcGill UniversityOccupational Cancer Research CentreMcGill Genome CentreRoyal Victoria Hospital
Fundersnot available
KeywordsClaudinCRISPRBiologyNephronKnockout mousePhenotypeCell biologyGene knockoutKidneyTight junctionGeneticsGene

Abstract

fetched live from OpenAlex

Claudins regulate the passage of ions and solutes between neighboring cells through tight junctions. The nephron is the functional unit of the kidney that filters the blood and removes excess water, salts and wastes. The filtering properties of the nephron are determined by the unique combination of claudins expressed within each segment. Claudins are expressed in the nephric duct in advance of kidney function. Nephric duct derivatives undergo branching morphogenesis and ultimately each branch tip induces a mesenchymal‐to‐epithelial transition event required for nephron formation. In the chick embryo, a reagent that specifically removes Claudin 3 and 4 from tight junctions blocked nephric duct formation. This led us to hypothesize that claudins are required for kidney development in the mouse. Claudin‐4 knockout mice do not have an embryonic phenotype, therefore, Claudin‐3 was prioritized for investigation. Claudin‐3 compound heterozygote mice were created using the CRISPR/Cas9 system of genome editing. Male and female founder mice were generated with distinct frameshift mutations in both Claudin‐3 alleles. Neither of these founders showed an obvious phenotype. Pups derived from mating these founders appeared grossly normal. Histological analysis of the kidneys did not reveal a nephron phenotype. In conclusion, Claudin‐3 null mice generated by CRISPR/Cas9 are healthy and fertile. We hypothesize that the lack of Claudin‐3 is compensated by other claudins. This will be tested by creating double knockouts using the CRISPR/Cas9 system, which would be predicted to create a more severe phenotype and allow further understanding of the important role of claudins during kidney development.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.001
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.014
Threshold uncertainty score0.048

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0010.001
Meta-epidemiology (narrow)0.0010.001
Meta-epidemiology (broad)0.0010.001
Bibliometrics0.0020.001
Science and technology studies0.0010.001
Scholarly communication0.0010.001
Open science0.0010.001
Research integrity0.0020.002
Insufficient payload (model declined to judge)0.0140.006

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.045
GPT teacher head0.304
Teacher spread0.259 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2015
Admission routes1
Has abstractyes

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