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Record W1536624913 · doi:10.1096/fasebj.21.6.lb102

The use of DNPH‐derivatized protein carbonyls as a marker of oxidative stress in mouse heart and liver

2007· article· en· W1536624913 on OpenAlexaff
Heathcliff D’Sa, Bart P. Hettinga, Adeel Safdar, Mark A. Tarnopolsky, Mazen J. Hamadeh, Sandeep Raha

Bibliographic record

VenueThe FASEB Journal · 2007
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicCoenzyme Q10 studies and effects
Canadian institutionsYork UniversityMcMaster UniversityMcMaster University Medical Centre
Fundersnot available
KeywordsOxidative stressProtein CarbonylationChemistryReactive oxygen speciesOxidative phosphorylationSuperoxide dismutaseBiomarkerBiochemistryMolecular biologyOxidative damageBiology

Abstract

fetched live from OpenAlex

Reactive oxygen species (ROS) have been shown to modify proteins, lipids and DNA. These modified biomolecules serve as markers for the quantification of oxidative stress in various physiological and diseased conditions. Identification and quantification of a marker of protein oxidation (i.e., protein carbonyls) in tissues continue to be time consuming and/or costly. To identify and quantify this biomarker, we utilized a mouse model of ALS (G93A) having a mutant human Cu/Zn‐superoxide dismutase gene resulting in elevated levels of ROS. Using spectroscopic methods, we previously reported that the G93A mouse has 53% higher protein carbonyls in the skeletal muscle as compared with wild‐type littermates. However, these methods require large amounts of sample. In this study, we present a comparison of immunochemical methods, using DNPH‐derivatized carbonyls (Oxyblot, Chemicon International vs. ELISA), to assess oxidative stress. A protein with an apparent molecular weight of 28 kDa proved to associate well with established patterns of oxidative stress in these animals. Higher carbonyl content (80%) was found in the liver of G93A versus wild‐type mice (5165 ± 741 AU vs. 2869 ± 762 AU, mean ± SEM, P = 0.044). Most importantly, this analysis required, at most, 3 μg of sample and is a more sensitive and biologically relevant measure of oxidative stress as compared with ELISA‐based methods. In summary, we have identified and quantified a 28 kDa protein that can serve as a measure of protein oxidative damage.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.005
Threshold uncertainty score0.185

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0010.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.014
GPT teacher head0.245
Teacher spread0.230 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations1
Published2007
Admission routes1
Has abstractyes

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