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Estimating abundance from presence/absence maps

2011· article· en· W1554901441 on OpenAlexafffund
Wen‐Han Hwang, Fangliang He

Bibliographic record

VenueMethods in Ecology and Evolution · 2011
Typearticle
Languageen
FieldEnvironmental Science
TopicEcology and Vegetation Dynamics Studies
Canadian institutionsUniversity of Alberta
FundersNatural Sciences and Engineering Research Council of CanadaNational Science Council
KeywordsAbundance (ecology)Relative abundance distributionMacroecologyPoisson distributionStatisticsSpatial analysisNegative binomial distributionSpecies distributionData setPopulationCount dataEcologyOccupancyRelative species abundanceMathematicsBiologySpecies richnessHabitat

Abstract

fetched live from OpenAlex

Summary 1. An important question in macroecology is: Can we estimate a species’ abundance from its occurrence on landscape? Answers to this question are useful for estimating population size from more easily acquired distribution data and for understanding the macroecological occupancy–abundance relationship. 2. Several methods have recently been developed to address this question, but no method is general enough to provide a common solution to all species because of the wide variation in spatial distribution of species. 3. In this study, we developed a mixed Gamma‐Poisson model that generalizes the negative binomial model and can characterize spatial dependence in the abundance distribution across cells. Under this framework, without any extra information, the clumping parameter and species abundance can be estimated using a map aggregation technique. This model was tested using a set of empirical census data consisting of 299 tree species from a 50‐ha stem‐mapped plot of Panama. 4. A comparison showed that the new method outperformed the previous methods to an appreciable degree. Particularly for abundant species in a finely gridded map (5 × 5 m), its bias is very small and the method can also reduce the root mean square error up to 30%. Like for previous methods, however, the new method’s performance decreases with the increase in cell size. 5. As a by‐product, the new method provides an approach to estimate spatial autocorrelation of species distribution which is otherwise difficult to estimate for presence/absence map.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: Observational
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.278
Threshold uncertainty score0.381

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0010.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.028
GPT teacher head0.316
Teacher spread0.288 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations29
Published2011
Admission routes2
Has abstractyes

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