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DETECTION OF A GROUP I (IE) FUNGAL INTRON IN THE GREEN ALGAL GENUS <i>UROSPORA</i> (ULVOPHYCEAE)<sup>1</sup>

2005· article· en· W1561992302 on OpenAlexaff
Sandra C. Lindstrom, Jelena Pistolic

Bibliographic record

VenueJournal of Phycology · 2005
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicGenomics and Phylogenetic Studies
Canadian institutionsUniversity of British Columbia
Fundersnot available
KeywordsIntronBiologyGroup I catalytic intron18S ribosomal RNAGeneticsGeneRNA splicingPhylogenetic treeRNA

Abstract

fetched live from OpenAlex

A group IE intron at position 989 ( Escherichia coli numbering) in the 18S rRNA gene is described for the first time from the green algae based on primary and secondary structure analysis of the intron. The intron occurred in Urospora neglecta Kornmann, U. wormskioldii (Mertens) Rosenvinge, and in an undescribed taxon closely allied with U. wormskioldii . The Urospora intron was 397 or 399 bp in length, except for one variant, which was 652 bp in length. The latter intron appeared to be a chimera, consisting of a conspecific part, a segment more closely related to another species, and a region of unknown origin. A search of data bases containing introns indicated that the green algal intron is homologous with other 989 introns, all occurring in fungi, which may be the source of the Urospora intron. The introduction of this intron into the Urospora lineage has occurred within the last 14 million years, based on estimates of the earliest divergence of the genus from other members of the family Acrosiphoniaceae, all of which lack 18S introns.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.654
Threshold uncertainty score0.409

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0010.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.007
GPT teacher head0.217
Teacher spread0.210 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations6
Published2005
Admission routes1
Has abstractyes

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