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Low genetic variability of<i>Striga gesnerioides</i>populations parasitic on cowpea might be explained by a recent origin

2010· article· en· W1562486943 on OpenAlexafffund
M‐P DUBE, François Belzile

Bibliographic record

VenueWeed Research · 2010
Typearticle
Languageen
FieldAgricultural and Biological Sciences
TopicPlant Parasitism and Resistance
Canadian institutionsUniversité Laval
FundersNatural Sciences and Engineering Research Council of Canada
KeywordsStrigaBiologyAmplified fragment length polymorphismScrophulariaceaeObligateGenetic variabilityPopulationCultivarParasitic plantGenetic variationBotanyAgronomyGenetic diversityHost (biology)GenotypeGeneticsGene

Abstract

fetched live from OpenAlex

DubeM‐P & BelzileFJ (2010). Low genetic variability ofStriga gesnerioidespopulations parasitic on cowpea might be explained by a recent origin.Weed Research50, 493–502. Summary Striga gesnerioidesis an obligate root hemiparasitic plant that causes considerable yield losses to cowpea, an important crop legume of Sub‐Saharan Africa. The use of resistant cultivars is the easiest and most effective method to control the parasite. Several cowpea cultivars exhibiting resistance have been identified during the last decades. However, most resistant cultivars show a differential response when grown in different countries across West Africa, suggesting that there are different races ofS. gesnerioides. In this study, we investigated the genetic variability within and between 43 populations of five of the previously recognised races of the parasite present in West Africa. Amplified fragment length polymorphism (AFLP) markers were used on up to 10 individuals from each population. These markers showed almost no genetic variability within populations. The variability between the populations was also extremely low and did not allow discrimination of the five races. There was a certain geographical structure, but no ‘racial’ clustering could be seen. Even AFLP markers previously reported to be race‐specific on another set ofStrigapopulations proved unable to discriminate between races in this collection of populations. Possible causes of the low level of genetic variability include the hypothesis that this strain has only quite recently arisen. Such a low level of variability and the absence of specific markers for the virulence will have consequences on the evolution of the parasite and on the development of adequate control methods.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.002
Threshold uncertainty score0.006

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0020.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.073
GPT teacher head0.332
Teacher spread0.259 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations7
Published2010
Admission routes2
Has abstractyes

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