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Structural characterization of mixed wt/mutant aquaporin‐2 tetramers using dual‐colored fluorescent subunit counting (1133.1)

2014· article· en· W1572970616 on OpenAlexaff
Yoann Lussier, Hugo McGuire, Abdulah El Tarazi, Pierre Bissonnette, Rikard Blunck, Daniel G. Bichet

Bibliographic record

VenueThe FASEB Journal · 2014
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicRenal and related cancers
Canadian institutionsHôpital du Sacré-Cœur de MontréalUniversité de Montréal
Fundersnot available
KeywordsTetramerMutantNephrogenic diabetes insipidusProtein subunitXenopusAquaporin 2ReabsorptionChemistryHEK 293 cellsFluorescenceImmunoprecipitationWild typeMolecular biologyCell biologyMutationTransfectionGreen fluorescent proteinBiophysicsBiologyGeneKidneyBiochemistryGeneticsEnzymePhysicsWater channel

Abstract

fetched live from OpenAlex

Mutations in Aquaporin‐2 (AQP2) induce nephrogenic diabetes insipidus, a water reabsorption defect of the kidney. Using co‐immunoprecipitation and functional assays, we have recently shown that (at least) some mild recessive (rec) AQP2 mutants can adequately associate to its wild‐type (wt) counterpart to generate fully functional wt/rec heterotetramers. To better characterize actual subunit distributions within wt/rec AQP2 populations, we have developed a dual‐colored fluorescent subunit counting approach in TIRF condition, in order to identify and quantify individual monomers through bleaching of linked fluorophores. Assays performed on both Xenopus oocyte and transfected cell line have confirmed that mild mutations (K228E, D150E and V24A), similar to wt‐AQP2, adequately oligomerize in tetramer, unlike the severe R187C mutant which only displays monomeric structures. In dual transfections (sfGFP‐wt‐AQP2 + RFP‐rec‐AQP2), we also confirm the presence of mixed wt/rec tetramers for mild mutations, but not with R187C, which remains monomeric. Ultimately, we aim at describing subunit distributions within wt/rec tetramers in order to evaluate the properties, limitations and functional outcome of such heteromeric associations.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.001
Threshold uncertainty score0.002

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.010
GPT teacher head0.225
Teacher spread0.214 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

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Citations0
Published2014
Admission routes1
Has abstractyes

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