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Record W1588741472 · doi:10.1111/jse.12080

Molecular phylogeny revealed complex evolutionary process in<i>Elymus</i>species

2014· article· en· W1588741472 on OpenAlexaff
Genlou Sun

Bibliographic record

VenueJournal of Systematics and Evolution · 2014
Typearticle
Languageen
FieldAgricultural and Biological Sciences
TopicChromosomal and Genetic Variations
Canadian institutionsSaint Mary's University
Fundersnot available
KeywordsElymusTriticeaeBiologyIntrogressionPhylogeneticsPhylogenetic treeGenomeEvolutionary biologyBotanyGeneticsGenePoaceae

Abstract

fetched live from OpenAlex

Abstract Recent molecular phylogenetic studies onElymushave added to our understanding of the origination ofElymusspecies. However, evolutionary dynamics and speciation of most species inElymusare unclear. Molecular phylogeny has demonstrated that reticulate evolution has occurred extensively in the genus, as an example, the largest subunit of RNA polymerase II (rpb2) and phosphoenolpyruvate carboxylase (pepC) data revealed two versions of theStgenome,St1andSt2contributing to speciation ofE. caninus. Phylogenetic analyses ofE. pendulinusuncovered additional genome‐level complexity. Our data indicated that both chloroplast and nuclear gene introgression have occurred in the evolutionary process ofE. pendulinus. Non‐donor species genomes have been detected in severalElymusspecies, such as in allohexaploidE. repens(StStStStHH), aTaeniatherum‐like (Tagenome in Triticeae) GBSSI sequence,Bromus‐ (Bromeae) andPanicum‐like (Paniceae) ITS sequences have been detected. The chloroplast DNA data indicated thatPseudoroegneriais the maternal genome donor toElymusspecies, but whether differentElymusspecies originated from differentStdonors remains an open question. The origin of theYgenome inElymusis puzzling. It is clear that theYgenome is distinct from theStgenome, but unclear on the relationships ofYto other genomes in Triticeae. Introgressive hybridization may be an important factor complicating the evolutionary history of the species inElymus. The extent of introgression and its role in creating diversity inElymusspecies should be the objective of further investigations.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.002
Threshold uncertainty score0.006

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0010.001
Science and technology studies0.0010.000
Scholarly communication0.0010.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0020.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.017
GPT teacher head0.214
Teacher spread0.198 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations21
Published2014
Admission routes1
Has abstractyes

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