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Exploring Genetic Influences On Variation In The Phenotypic Expression Of Parkinson’s Disease. (P2.029)

2014· article· en· W1594468099 on OpenAlexaboutno aff
Naveed Malek, Sarah Marrinan, Nin Bajaj, Roger A. Barker, Yoav Ben‐Shlomo, Catherine Bresner, David J. Burn, Thomas Foltynie, Huw R. Morris, Nigel Williams, Donald G. Grosset

Bibliographic record

VenueNeurology · 2014
Typearticle
Languageen
FieldNeuroscience
TopicNuclear Receptors and Signaling
Canadian institutionsnot available
Fundersnot available
KeywordsPhenotypeVariation (astronomy)Parkinson's diseaseExpression (computer science)DiseaseGeneticsGenetic variationBiologyMedicinePathologyGeneComputer science

Abstract

fetched live from OpenAlex

Objective: To investigate the influence of genotype on the phenotypic expression of Parkinson’s disease (PD). Background: A United Kingdom based multi-centre longitudinal study, the Parkinson’s Repository of Biosamples and Networked Datasets (PRoBaND), also known as Tracking Parkinson’s, is on-going. This is an interim report from the study. Methods: Testing was undertaken for common PD gene mutations. Validated clinical scales and questionnaires were used. Results: 191 early onset (diagnosed < 50 years old), and 548 late onset cases have been tested, out of 1860 recruited. 95% are Caucasian; two-thirds are male. In early onset cases, 19 (10%) tested positive (5 LRRK2, 11 GBA, 3 PARKIN), aged 51.6 (SD 6.2), disease duration 12.7 years (SD 8.8); and 173 (90%) tested negative, aged 52.6 (SD 8.3), disease duration 10.0 years (SD 6.6). The total unified PD rating scale (UPDRS) score in gene test positives was 70.4 (SD 26.8) vs 67.1 (SD 25.7) in gene test negatives; Montreal cognitive assessment (MOCA) score was 21.3 (SD 4.1) vs 22.3 (SD 3.5), and quality of life (QOL) score was 36.1 (SD 17.3) vs 35.9 (SD 17.9). In late onset cases, 20 tested positive (3.7%) (6 LRRK2, 14 GBA), aged 59.5 (SD 13.4), disease duration 1.7 years (SD 1.0); and 528 tested negative (96.3%), aged 65.1(SD 13.1), disease duration 1.4 years (SD 1.0). The total UPDRS score in gene test positives was 48.5 (SD 21.6) vs 40.9 (SD 19.4) in gene test negatives; MOCA score was 21.5 (SD 5.8) vs 19.9 (SD 7.1), and QOL score was 19.3 (SD 14.2) vs 21.0 (SD 15.1). Conclusion: Early onset PD is more likely to test positive for known gene mutations, as expected. Further analysis extending the scope of genetic testing, and linked to progression rates, is planned. Supported by: Parkinson's UK

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.922
Threshold uncertainty score0.218

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.061
GPT teacher head0.249
Teacher spread0.188 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2014
Admission routes1
Has abstractyes

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