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Record W1601555021 · doi:10.1002/humu.22811

A Mitochondrial Translation Defect Identified by Whole-Exome Sequencing Expands the Phenotypic Spectrum for<i>MARS2</i>

2015· article· en· W1601555021 on OpenAlexaboutno aff
Michael F. Wangler, Vafa Bayat, Hugo J. Bellen

Bibliographic record

VenueHuman Mutation · 2015
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicRNA modifications and cancer
Canadian institutionsnot available
FundersNational Institute of General Medical SciencesTarget ALSRobert A. and Renee E. Belfer Family FoundationNational Institute of Neurological Disorders and StrokeHoward Hughes Medical Institute
KeywordsBiologyGeneticsExomeExome sequencingMitochondrial DNAMissense mutationPhenotypeGene

Abstract

fetched live from OpenAlex

The mitochondrial genome encodes 13 proteins of the Electron Transport Chain. This genome requires nuclear-encoded proteins for its maintenance, replication, transcription and translation. A growing list of disorders ranging from ovarian dysgenesis, pulmonary hypertension and neurodegeneration have been found to result from mutations in mitochondrial aminoacyl-tRNA synthetases required for mitochondrial translation. Complex duplications of the MARS2 locus have previously been reported in French Canadian individuals with autosomal recessive spastic ataxia with leukoencephalopathy (ARSAL) (Bayat et al., PLOS Biology 10(3): e1001288, 2012). Webb et al. (Hum Mutat 36:587–592, 2015) now report missense mutations in the MARS2 gene through whole exome sequencing of two siblings with a severe earlier onset “ARSAL-like” condition, suggestive of a phenotypic expansion for MARS2. Besides the neurologic features, the siblings display a marked pectus carinatum, dysmorphic features and growth failure. Interestingly, they lack ataxic features although they are younger than ARSAL patients. The clinical feature of growth failure, besides being related to low levels of growth hormone, may also be related to lower overall proliferation rates, similar to what was reported by Bayat et al. in studies of MARS2 mutant flies and ARSAL patient cell lines. Importantly, the authors demonstrate mutations in both siblings and rule out other candidates through exome filtering and mtDNA analysis. Further supporting the role of defective mitochondrial translation, they demonstrate Complex I and IV dysfunction in patient fibroblasts and find reduced protein levels of NDUFB8 and COXII, defects that they can rescue with MARS2 expression. This study expands the phenotype related to MARS2, demonstrates distinct phenotypes resulting from point mutations vs. the previously reported complex duplications, and underscores the importance of mitochondrial tRNA synthetases as key candidate genes for a range of phenotypes.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame distilled prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. Learned from the 10,348 direct Codex labels and 10,348 direct Gemma labels. Candidate is the union of thresholded teacher heads; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels or direct frontier model labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: codex-gemma-dda1882f352aValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.171
Threshold uncertainty score0.349

Codex and Gemma teacher scores by category

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0000.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.047
GPT teacher head0.297
Teacher spread0.249 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one teacher head, not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2015
Admission routes1
Has abstractyes

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