MétaCan
Menu
← Back to cohort
Record W1605562857

Adventitious shoot regeneration and genetic transformation of Prunus serotina for reproductive sterility

2008· article· en· W1605562857 on OpenAlexaboutno aff
Xiaomei Liu

Bibliographic record

VenuePurdue e-Pubs (Purdue University System) · 2008
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicPlant tissue culture and regeneration
Canadian institutionsnot available
Fundersnot available
KeywordsSterilityBiologyTransformation (genetics)Regeneration (biology)PrunusShootBotanyGeneticsGene
DOInot available

Abstract

fetched live from OpenAlex

Black cherry (Prunus serotina Ehrh.) is a valuable hardwood in the eastern United States and Canada. Demand for high-quality black cherry wood is increasing and there is a need to establish plantations with improved black cherry trees. Genetically improved trees containing foreign genes are subject to government regulatory guidelines for field planting because of the potential for dispersal of transgenic pollen and seeds, and the environmental impact could be difficult to predict and control. To reduce the dispersion of some genes, engineering reproductive sterility will help simplify the impact, and thus facilitate regulatory and public approval. In this dissertation, a regeneration and transformation system for mature black cherry explants was developed, and transgenic black cherry plantlets with the AGAMOUS (AG) gene cloned from black cherry or the apple AG gene were produced. A regeneration system for black cherry from a juvenile (F) and two mature genotypes (#3 and #4) was developed. Adventitious shoots regenerated from leaves of in vitro cultures on woody plant medium with thidiazuron (TDZ) and naphthaleneacetic acid (NAA). The best regeneration for genotype F (91.4%) with a mean number of 8.2 shoots was observed on medium with 9.08 μM TDZ and 1.07 μM NAA. Genotype #3 had the highest regeneration (41.7%) with a mean number of 4.8 shoots per explant on 9.08 μM TDZ and 1.07 μM NAA, whereas genotype #4 had a 38.8% regeneration with a mean of 3.3 shoots per explant. Silver thiosulphate at 60 or 80 μM increased the percent regeneration of the mature genotypes #3 (75%) and #4 (58.1%). Adventious shoots were rooted (70 to 76%) and rooted plantlets survived acclimatization in the greenhouse. PsAG (a putative flower homeotic identity gene) was cloned and characterized from black cherry and its MIKC-type structure shown to be a homolog of the Arabidopsis thaliana AG. It is a single-copy gene in black cherry. A phylogenetic analysis indicated that PsAG is a C-class flower homeotic gene, and it has high similarity to other AG homologs such as those from Prunus persica and P. mune. PsAG meets the criteria for AG subfamily gene structure with a typical MIKC structure. In situ hybridization showed that PsAG was expressed mainly in the floral meristem, such as stamen and carpel primordia when the flowers are in the early stages of development, and PsAG accumulated in the tissues of the ovary, stigma, style, and stamens. When the flowers matured, PsAG had enhanced expression in the ovary, style, and stigma with decreased expression in the stamen. PsAG remains to be expressed in the ovules. The expression pattern was consistent with those of AG and homologs from other species, such as apple and peach. A protocol for Agrobacterium-mediated transformation was developed for leaf explants of black cherry. Agrobacterium tumefaciens strain EHA105 harboring an RNAi plasmid with the apple AG gene or black cherry AG gene was used. Regenerating shoots were selected 27 days or 48 days after co-culture. Transformation efficiencies based on PCR analysis of individual putative transformed shoots from independent lines relative to the initial number of leaf explants tested ranged from 0.9% for construct MdAGRNAi (apple) and 1.2% for PsAGRNAi (black cherry). Southern blot analysis on five randomly chosen PCR-positive shoots confirmed the presence of the nptII and AG transgene, and late selection protocols used in this study have greatly improved the transformation efficiency in black cherry.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.002
Threshold uncertainty score0.004

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.001
Insufficient payload (model declined to judge)0.0010.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.011
GPT teacher head0.189
Teacher spread0.179 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2008
Admission routes1
Has abstractyes

Explore more

Same venuePurdue e-Pubs (Purdue University System)→Same topicPlant tissue culture and regeneration→French-language works237,207→