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Record W1623327531

Expression of β-catenin, CDX1 and CDX2 in esophageal adenocarcinoma: association with survival after esophageal resection

2006· article· en· W1623327531 on OpenAlexaff
Lara Williams, Laurette Geldenhuys, Nadine Vaninetti, Duane L. Guernsey, Alan G. Casson

Bibliographic record

VenueClinical Cancer Research · 2006
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicCancer-related gene regulation
Canadian institutionsDalhousie University
Fundersnot available
KeywordsImmunohistochemistryWnt signaling pathwayCateninCDX2AdenocarcinomaBiologyMessenger RNABeta-cateninCancer researchBarrett's esophagusPathogenesisPathologyEsophageal diseaseSurvival analysisEsophagusMedicineInternal medicineGene expressionSignal transductionCancerGeneHomeoboxCell biology
DOInot available

Abstract

fetched live from OpenAlex

A25 Background: The Wnt/β-catenin signaling pathway is a key regulator of cellular growth and differentiation, and its dysregulation has recently been implicated in the molecular pathogenesis of human esophageal adenocarcinoma (EADC). Similarly, the caudal-related homologues (CDX1 and CDX2) are integral to gastrointestinal proliferation and differentiation, and are transcriptional targets of the Wnt/ β-catenin pathway. The aim of this study was to characterize β-catenin, CDX 1 , and CDX 2 mRNA and protein expression in human EADC and to correlate expression profiles with histo-pathologic and clinical parameters including patient survival.Methods: Total RNA was extracted from human esophageal tissues (tumor and matched normal) obtained with informed consent from 28 patients who underwent esophageal resection for primary EADC between 2002 and 2003. Semi-quantitative RT-PCR using primers to amplify target sequences of β-catenin, CDX 1 and CDX 2 was performed and normalized to β-actin as an internal control. Levels of mRNA expression in EADC were determined relative to histologically normal esophageal squamous epithelia from the same patient. Immunohistochemistry (IHC) was used to study protein distribution in corresponding formalin-fixed, paraffin-embedded tissue sections. Statistical analyses were performed to determine associations between expression levels of β-catenin, CDX 1 , CDX 2 , and selected clinico-pathologic parameters (including tumor grade and stage) and postoperative survival (median survival below or greater than 14 months).Results: Overexpression of β-catenin mRNA was found in 10/28 EADCs, and was associated with survival over 14 months (9/10 vs. 9/18, p=0.034). Overexpression of CDX 1 and CDX 2 mRNA was seen in 13/28 and 15/28 EADCs, respectively, but no association with clinico-pathologic parameters or outcome was seen. Although not statistically significant, CDX 1 mRNA overexpression was associated with increased β-catenin mRNA expression (7/10 vs. 6/18, p=0.062). IHC revealed heterogenous patterns of immunoreactivity, with cell nuclear positivity for β-catenin in 12 tumors, and cytoplasmic staining for CDX2 in 21 EADCs.Conclusions: The significant association between β-catenin mRNA expression and survival after esophagectomy suggests that β-catenin may be a useful molecular prognostic marker in patients with EADC. Furthermore, these exploratory studies implicate CDX1 in the molecular pathogenesis of EADC, perhaps through modulation of the Wnt/ β-catenin pathway.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: Observational
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.001
Threshold uncertainty score0.003

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.037
GPT teacher head0.383
Teacher spread0.346 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2006
Admission routes1
Has abstractyes

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