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Gene‐diet interaction effects during a supplementation with n‐3 PUFA on both plasma and gene expression levels of inflammatory markers (1037.9)

2014· article· en· W1808829774 on OpenAlexfundno aff
Hubert Cormier, Iwona Rudkowska, Patrick Couture, Simone Lemieux, Marie‐Claude Vohl

Bibliographic record

VenueThe FASEB Journal · 2014
Typearticle
Languageen
FieldNursing
TopicFatty Acid Research and Health
Canadian institutionsnot available
FundersCanadian Institutes of Health Research
KeywordsGene expressionPeripheral blood mononuclear cellSingle-nucleotide polymorphismGeneBiologyInflammationGene clusterBiomarkerInterleukin 6ImmunologyEndocrinologyGenotypingInternal medicineGenotypeMedicineGenetics

Abstract

fetched live from OpenAlex

Objective: To test whether gene expression of inflammatory genes is altered following an n‐3 PUFA supplementation and to test for any possible gene‐diet interactions modulating plasma inflammatory biomarker levels. Methods: 210 subjects completed a 6‐wk n‐3 PUFA supplementation with 5g/d of fish oil. Gene expression of TNF and IL6 was assessed in peripheral blood mononuclear cells (PBMC) using the TaqMan technology adjusted for the endogenous control (GAPDH). Genotyping of 20 SNPs from the TNF‐LTA gene cluster, IL1β , IL6 and CRP genes was performed. Results: Gene expression of TNF and IL6 increased after the 6‐wk n‐3 PUFA supplementation as shown by 2 ‐ΔΔCt values >1 (mean±SD, 1.05±0.39 and 1.18±0.50, respectively). In a MIXED model for repeated measures adjusted for the effects of age, sex and BMI, gene by supplementation interactions effects were observed for rs1143627, rs16944, rs1800797, and rs2069840 on IL6 levels, for rs2229094 on TNF‐alpha levels and for rs1800629 on CRP levels (p<0.05 for all). Conclusions: An n‐3 PUFA supplementation could alter gene expression levels of TNF and IL6 in PBMC. Also, the large inter‐individual variability in plasma inflammatory markers following an n‐3 PUFA supplementation may be influenced by genetic variations in inflammatory genes. Grant Funding Source : CIHR

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.001
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Observational · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.003
Threshold uncertainty score0.009

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0010.001
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0010.001
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0030.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.017
GPT teacher head0.287
Teacher spread0.270 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designObservational
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2014
Admission routes1
Has abstractyes

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