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Record W181614955 · doi:10.1096/fasebj.21.5.a542-b

Hepatocyte nuclear factor 4alpha (HNF‐4α) promotes polarization and activates vectorial transport in intestinal epithelial cell

2007· article· en· W181614955 on OpenAlexafffund
Carine Lussier, Jean‐Philippe Babeu, François Boudreau

Bibliographic record

VenueThe FASEB Journal · 2007
Typearticle
Languageen
FieldMedicine
TopicPediatric Hepatobiliary Diseases and Treatments
Canadian institutionsUniversité de Sherbrooke
FundersNatural Sciences and Engineering Research Council of CanadaCanadian Institutes of Health Research
KeywordsCDX2BiologyMolecular biologyCell biologyHepatocyte nuclear factorsCell cultureGene expressionWestern blotTranscription factorCellGeneGeneticsHomeobox

Abstract

fetched live from OpenAlex

The aim of this work was to identify transcription factors implicated in the regulation of intestinal epithelial cell (IEC) differentiation. METHODS AND RESULTS: An IEC‐6 cell line that expressed Cdx2 (IEC6‐L1) was induced to polarize and differentiate when co‐cultured 8 days with intestinal mesenchymal cells (IMC). Co‐cultured cells were harvested at days 1, 3, 5 and 8 and submitted to a gene expression analysis. HNF‐4α was not expressed at days 1 and 3 and began to be detectable at the mRNA level at day 5 when clusters of polarizing cells appeared. Western blot analysis confirmed that HNF‐4α was detectable around co‐culture day 6 and immunolocalization analysis showed that it was strictly expressed by clusters of polarized cells. The gene profiling analysis revealed numerous putative targets of HNF‐4α among the up‐regulated genes. Retroviral construct allowing the expression of HNF‐4α cDNA was used to stably infect IEC6‐L1 cells. When co‐cultured with IMC, IEC6‐L1/HNF‐4α polarized more rapidly than controls and formed dome‐like elevations. Electron microscopy confirmed that IEC6‐L1/HNF‐4α accumulated material between their bases and the subjacent IMC monolayer. CONCLUSION: HNF‐4α was recently implicated in the regulation of specific intestinal‐differentiated genes. Our results strongly suggest that HNF‐4α is implicated in IEC polarization, functional absorption and transport. (Work supported by CIHR, NSERC, FRSQ)

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.001
Threshold uncertainty score0.003

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.012
GPT teacher head0.246
Teacher spread0.233 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2007
Admission routes2
Has abstractyes

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