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Record W1855903271 · doi:10.1212/wnl.0b013e318253d5b3

Predicting missing biomarker data in a longitudinal study of Alzheimer disease

2012· article· en· W1855903271 on OpenAlexaff
Raymond Y. Lo, William J. Jagust, Paul Aisen, Clifford R. Jack, Arthur W. Toga, Laurel Beckett, Anthony Gamst, Holly Soares, Robert C. Green, Tom Montine, Ronald G. Thomas, Michael Donohue, Sarah Walter, Anders M. Dale, Matt A. Bernstein, Joel P. Felmlee, Nick C. Fox, Paul M. Thompson, Norbert Schuff, Gene Alexander, Charles DeCarli, Dan Bandy, Kewei Chen, John C. Morris, Virginia M.‐Y. Lee, Magdalena Korecka, Karen Crawford, Scott Neu, Danielle Harvey, John Kornak, Andrew J. Saykin, Tatiana Foroud, Steven G. Potkin, Li Shen, Neil Buckholtz, Jeffrey Kaye, Sara Dolen, Joseph F. Quinn, Lon S. Schneider, Sonia Pawluczyk, Bryan M. Spann, James Brewer, Helen Vanderswag, Judith L. Heidebrink, Joanne Lord, Ronald Petersen, Kris Johnson, Rachelle S. Doody, Javier Villanueva‐Meyer, Munir Chowdhury, Yaakov Stern, Lawrence S. Honig, Karen L. Bell, Mark A. Mintun, Stacy Schneider, Daniel Marson, Randall Griffith, David Clark, Hillel Grossman, Cheuk Y. Tang, George Marzloff, Leylade Toledo-Morrell, Raj C. Shah, Ranjan Duara, Daniel Varón, Peggy Roberts, Marilyn S. Albert, Julia Pedroso, Jaimie Toroney, Henry Rusinek, Mony J. de Leon, Susan M De Santi, P. Murali Doraiswamy, Jeffrey R. Petrella, Marilyn Aiello, Christopher M. Clark, Cassie Pham, Jessica Nuñez, Charles D. Smith, Curtis A. Given, Peter Hardy, Oscar L. López, MaryAnn Oakley, Donna M. Simpson, M. Saleem Ismail, Connie Brand, Jennifer Richard, Ruth A. Mulnard, Gaby Thai, Catherine Mc-Adams-Ortiz, Ramon Diaz‐Arrastia, Kristen Martin-Cook, Michael D. Devous, Allan I. Levey, James J. Lah, Janet S. Cellar, Jeffrey M. Burns, Heather S. Anderson, Mary M. Laubinger, George Bartzokis, Daniel Silverman, Po H. Lu, Neill R Graff-Radford MBBCH, Francine Parfitt, Heather Johnson, Martin R. Farlow, Scott Herring, Ann Marie Hake, Christopher H. van Dyck, Martha G. MacAvoy, Amanda L. Benincasa, Howard Chertkow, Howard Bergman, Chris Hosein, Sandra E. Black, Simon J. Graham, Curtis Caldwell, Ging‐Yuek Robin Hsiung, Howard Feldman, Michele Assaly, Andrew Kertesz, John Rogers, Dick Trost, Charles Bernick, Donna Munic, Chuang‐Kuo Wu, Nancy Johnson, Marsel Mesulam, Carl Sadowsky, Walter Martínez, Teresa Villena, Scott Turner, Kathleen Johnson, Kelly E. Behan, Reisa A. Sperling, Dorene M. Rentz, Keith A. Johnson, Allyson Rosen, Jared Tinklenberg, Wes Ashford, Marwan N. Sabbagh, Donald J. Connor, Sandra A. Jacobson, Ronald Killiany, Alexander Norbash, Anil K. Nair, Thomas O. Obisesan, Annapurni Jayam‐Trouth, Paul Wang, Alan J. Lerner, Leon Hudson, Paula Ogrocki, Evan Fletcher, Owen Carmichael, Smita Kittur, Seema Mirje, Michael Borrie, T‐Y Lee, Dr Rob Bartha, Sterling C. Johnson, Sanjay Asthana, Cynthia M. Carlsson, Steven Potkin, Adrian Preda, Dana Nguyen, Pierre N. Tariot, Adam Fleisher, Stephanie Reeder, Vernice Bates, Horacio Capote, Michelle Rainka, Barry Hendin, Douglas W. Scharre, Maria Kataki, Earl A. Zimmerman, Dzintra Celmins, Alice D. Brown, Sam Gandy, Marjorie E. Marenberg, Barry W. Rovner, Godfrey D. Pearlson, Karen Anderson, Robert B. Santulli, Jessica Englert, Jeff D. Williamson, Kaycee M. Sink, Franklin Watkins, Brian R. Ott, Ronald Cohen, Stephen Salloway, Paul Malloy, Stephen Correia, Howard J. Rosen, Bruce L. Miller, Jacobo Mintzer

Bibliographic record

VenueNeurology · 2012
Typearticle
Languageen
FieldMedicine
TopicDementia and Cognitive Impairment Research
Canadian institutionsSunnybrook Health Science CentreSt Joseph's Health CentreMcGill UniversityJewish General Hospital
FundersNational Institute on AgingGenentechNational Institutes of HealthBayer HealthCareAlzheimer's AssociationSynarcTauRx Pharmaceuticals
KeywordsMissing dataBiomarkerNeuroimagingLongitudinal studyAlzheimer's Disease Neuroimaging InitiativeLogistic regressionMedicineAlzheimer's diseaseInternal medicineCognitionOncologyDepression (economics)DiseaseClinical trialUnivariatePsychologyPathologyPsychiatryMultivariate statistics

Abstract

fetched live from OpenAlex

OBJECTIVE: To investigate predictors of missing data in a longitudinal study of Alzheimer disease (AD). METHODS: The Alzheimer's Disease Neuroimaging Initiative (ADNI) is a clinic-based, multicenter, longitudinal study with blood, CSF, PET, and MRI scans repeatedly measured in 229 participants with normal cognition (NC), 397 with mild cognitive impairment (MCI), and 193 with mild AD during 2005-2007. We used univariate and multivariable logistic regression models to examine the associations between baseline demographic/clinical features and loss of biomarker follow-ups in ADNI. RESULTS: CSF studies tended to recruit and retain patients with MCI with more AD-like features, including lower levels of baseline CSF Aβ(42). Depression was the major predictor for MCI dropouts, while family history of AD kept more patients with AD enrolled in PET and MRI studies. Poor cognitive performance was associated with loss of follow-up in most biomarker studies, even among NC participants. The presence of vascular risk factors seemed more critical than cognitive function for predicting dropouts in AD. CONCLUSION: The missing data are not missing completely at random in ADNI and likely conditional on certain features in addition to cognitive function. Missing data predictors vary across biomarkers and even MCI and AD groups do not share the same missing data pattern. Understanding the missing data structure may help in the design of future longitudinal studies and clinical trials in AD.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.050
metaresearch head score (Gemma)0.129
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesMetaresearch
Consensus categoriesnone
DomainCandidate signal: Methods · Consensus signal: none
Study designCandidate signal: Simulation or modeling · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.950
Threshold uncertainty score0.266

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0500.129
Meta-epidemiology (narrow)0.0010.001
Meta-epidemiology (broad)0.0010.001
Bibliometrics0.0020.002
Science and technology studies0.0010.001
Scholarly communication0.0010.002
Open science0.0010.002
Research integrity0.0010.002
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.136
GPT teacher head0.405
Teacher spread0.268 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

Study designSimulation or modeling
DomainMethods
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations50
Published2012
Admission routes1
Has abstractyes

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