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Record W1874571310 · doi:10.1139/l09-174

Enrichment and characterization of MTBE-degrading cultures under iron and sulfate reducing conditions

2010· article· en· W1874571310 on OpenAlexfundvenueno aff
M. Raynal, Barbara Crimi, Amy Pruden

Bibliographic record

VenueCanadian Journal of Civil Engineering · 2010
Typearticle
Languageen
FieldEnvironmental Science
TopicMicrobial bioremediation and biosurfactants
Canadian institutionsnot available
FundersSuncor Energy Incorporated
KeywordsBiodegradationElectron acceptorChemistryEnvironmental chemistryEnrichment culture16S ribosomal RNASulfate-reducing bacteriaSulfateOrganic chemistryBacteriaBiologyBiochemistryGene

Abstract

fetched live from OpenAlex

The aim of this study was to enrich cultures capable of anaerobic methyl tert-butyl ether (MTBE) biodegradation and to determine their compositions using biomolecular tools. MTBE biodegradation as the sole carbon source was observed under Fe(III) and SO42–reducing conditions and with both electron acceptors present together. The estimated MTBE biodegradation rates ranged from 3.80 to 9.20 mg·L–1·d–1when Fe(III) was the sole electron acceptor, from 1.46 to 1.70 mg·L–1·d–1when Fe(III) and SO42–were present together, and from 1.13 to 1.71 mg·L–1·d–1when SO42–was the sole electron acceptor. Five to eight members were identified in the three consortia, and their characteristics were congruent with the electron acceptor conditions. A clone 99% similar to a recently described MTBE degrader, Ochrobactrum cytisi, was detected in both cultures containing Fe(III). Other 16S rRNA gene sequences detected were highly similar at the species or genus level to additional known MTBE degraders, including Pseudomonas spp. (cometabolic), Sphinogomonas, Achromobacter, and Rhodococcus. Results suggest that the buildup of intermediates and (or) the presence of sulfides had an inhibitory effect on biodegradation. Anaerobic MTBE biodegradation remains poorly understood, and degrading strains still have not been identified to date. This work represents the first detailed 16S rRNA gene profiling of highly enriched iron- and sulfate-reducing MTBE-degrading consortia. These results may provide useful biomarkers to support current efforts for confirming anaerobic MTBE biodegradation in the field.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.001
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.001
Threshold uncertainty score0.002

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.001
Meta-epidemiology (narrow)0.0010.000
Meta-epidemiology (broad)0.0010.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0010.000
Open science0.0000.001
Research integrity0.0010.000
Insufficient payload (model declined to judge)0.0000.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.004
GPT teacher head0.181
Teacher spread0.177 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations8
Published2010
Admission routes2
Has abstractyes

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