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Formate: a key metabolite for the fetus and neonatal animal (827.5)

2014· article· en· W1877048962 on OpenAlexafffund
John T. Brosnan, Shannon E. Washburn, Brian Harnett, Luke MacMillan, Theerawat Pongnopparat, Margaret E. Brosnan

Bibliographic record

VenueThe FASEB Journal · 2014
Typearticle
Languageen
FieldMedicine
TopicFolate and B Vitamins Research
Canadian institutionsMemorial University of Newfoundland
FundersCanadian Institutes of Health ResearchResearch and Development Corporation of Newfoundland and Labrador
KeywordsFormateChemistryMetabolismMetabolitePurine metabolismBiochemistryAmniotic fluidMethylationCreatineFetusIsotope dilutionPurineInternal medicineEndocrinologyPregnancyChromatographyBiologyMass spectrometryDNAMedicine

Abstract

fetched live from OpenAlex

One‐carbon metabolism, mediated by tetrahydrofolate (THF), is critical for nucleotide synthesis and for methylation reactions, including DNA methylation and the synthesis of small molecules such as creatine and phosphatidylcholine. In addition to one‐carbon groups carried by THF it is apparent that formate is also a key intermediate in one‐carbon metabolism. Produced within mitochondria, formate is released to the cytosol, and incorporated into 10‐formyl‐THF where it may be directly used for purine synthesis or converted to more reduced forms for thymidylate synthesis and for the methylation of homocysteine to methionine. We employed a GC/MS, isotope dilution assay to measure formate levels in situations of rapid growth and development. Plasma [formate] was ~40 uM in adult rats; however, levels of ~400 uM were evident in neonatal (2‐3 days old) rats, declining to adult levels at about 56 days. Plasma [formate] was ~10 uM in non‐pregnant ewes; this increases to ~40 uM during pregnancy. Much higher levels were found in plasma from fetal lambs and amniotic fluid (116‐121 days gestation). We suggest that these data point to a key role for formate in growing organisms, possibly in distributing one‐carbon groups to different organs. (Supported by CIHR, RDC). Grant Funding Source : CIHR, RDC

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.008
Threshold uncertainty score0.027

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0010.000
Insufficient payload (model declined to judge)0.0080.002

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.022
GPT teacher head0.294
Teacher spread0.272 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2014
Admission routes2
Has abstractyes

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