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Exploring neurotherapeutic space: how many neurological drugs exist (or could exist)?

2010· article· en· W1926170905 on OpenAlexafffund
Donald F. Weaver, Colin Weaver

Bibliographic record

VenueJournal of Pharmacy and Pharmacology · 2010
Typearticle
Languageen
FieldComputer Science
TopicComputational Drug Discovery Methods
Canadian institutionsDalhousie University
FundersCanadian Institutes of Health Research
KeywordsChemical spaceDruggabilityVirtual screeningNeurochemicalNeuroactive steroidDrug discoverySpace (punctuation)ChemistryNeuroscienceComputational biologyComputer sciencePsychologyReceptorBiology

Abstract

fetched live from OpenAlex

OBJECTIVES: Since high-throughput screening of compound libraries (virtual or real) against druggable targets is increasingly being used to discover therapies for brain disorders, it is crucial to ascertain if such screening methods adequately explore 'neurotherapeutic space (i.e. the total number of molecules that are or could be neuroactive)'. We present an approach to providing an estimate of the size of neurotherapeutic space. METHODS: Molecular modelling and statistical calculations were used to determine the number of molecules, which exist or could exist, with the necessary physicochemical and structural properties to be neurologically active drugs. KEY FINDINGS: Assuming eight fundamental types of drug-receptor interactions, five different functional groups per type of interaction and five different molecular platforms for each functional group array, we calculated the total number of molecules that could be contained within a 7 Å radius sphere, used to define neuroactive chemical space. This calculation revealed that there are 6 × 10(15) molecules that could be neurological drugs. CONCLUSIONS: Clearly, when it comes to exploring neurochemical space, we are still in our infancy and conventional high-throughput screening provides only a very limited sampling of the neuroactive chemical space that is available to neurotherapeutic compounds.

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.001
metaresearch head score (Gemma)0.005
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Simulation or modeling · Consensus signal: none
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.003
Threshold uncertainty score0.010

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0010.005
Meta-epidemiology (narrow)0.0010.000
Meta-epidemiology (broad)0.0010.001
Bibliometrics0.0010.001
Science and technology studies0.0010.002
Scholarly communication0.0020.004
Open science0.0010.001
Research integrity0.0010.001
Insufficient payload (model declined to judge)0.0030.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.152
GPT teacher head0.389
Teacher spread0.237 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designSimulation or modeling
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations14
Published2010
Admission routes2
Has abstractyes

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