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Targeting and inactivation of endoplasmic reticulum chaperones by L‐homocysteine: a pathway to ER stress

2008· article· en· W193585541 on OpenAlexaff
А. В. Глущенко, Armend Axhemi, Hiam Al‐Bayati, Richard C. Austin, Donald W. Jacobsen

Bibliographic record

VenueThe FASEB Journal · 2008
Typearticle
Languageen
FieldBiochemistry, Genetics and Molecular Biology
TopicEndoplasmic Reticulum Stress and Disease
Canadian institutionsMcMaster University
FundersNational Institutes of Health
KeywordsEndoplasmic reticulumUnfolded protein responseHomocysteineKDELProtein disulfide-isomeraseChemistryGlucose-regulated proteinBiochemistryProtein foldingRecombinant DNAMicrosomeMolecular biologyIn vitroBiologyGolgi apparatus

Abstract

fetched live from OpenAlex

Homocysteine may disrupt protein folding within the endoplasmic reticulum (ER) causing ER stress and activating the unfolded protein response. We hypothesize that L‐homocysteine induces ER stress by interacting with and modulating the activity of 78‐kDa glucose‐regulated protein (GRP78) and protein disulfide isomerase (PDI). In vitro S ‐homocysteinylation of human recombinant GRP78 (hrGRP78) and rat recombinant PDI (rrPDI) was identified by SDS‐PAGE and phosphorimage analysis. We determined that 0.27 mol of 35 S ‐L‐homocysteine and 0.38 mol of 35 S ‐L‐homocysteine react per mol of hrGRP78 and rrPDI, respectively. Evidence for in situ S ‐homocysteinylation of GRP78 and PDI was obtained by incubating rat liver microsomes with 35 S ‐L‐homocysteine, immunoprecipitating with mouse anti‐KDEL monoclonal antibodies, phosphorimaging and LC/MS/MS. Using surface plasmon resonance, we observed weaker interactions between peptide pp38 and S ‐homocysteinylated‐hrGRP78, compared to native hrGRP78 protein. In contrast, L‐homocysteine stimulated the activity of PDI in the insulin precipitation assay. We conclude that L‐homocysteine directly targets and alters the function of the ER resident chaperones GRP78 and PDI. This pathway links homocysteine to ER stress, cardiovascular disease and other disorders associated with abnormal protein accumulation. (Supported by NIH, HL52234 (DWJ)).

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.001
Threshold uncertainty score0.004

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0010.000

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.006
GPT teacher head0.209
Teacher spread0.202 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2008
Admission routes1
Has abstractyes

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