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Record W194680597 · doi:10.1096/fasebj.21.5.a655-b

The mouse phosphatidylethanolamine <i>N</i> ‐methyltransferase is regulated transcriptionally during hepatic perinatal development

2007· article· en· W194680597 on OpenAlexafffundabout
Laura Cole, Dennis E. Vance

Bibliographic record

VenueThe FASEB Journal · 2007
Typearticle
Languageen
FieldMedicine
TopicCannabis and Cannabinoid Research
Canadian institutionsHeritage Medical Research ClinicUniversity of Alberta
FundersAlberta Heritage Foundation for Medical Research
KeywordsMolecular biologyPromoterOligonucleotideBiologyTranscription (linguistics)GeneTranscription factorResponse elementChemistryGene expressionBiochemistry

Abstract

fetched live from OpenAlex

Phosphatidylcholine (PC) is the predominant phospholipid in mammalian plasma lipoproteins and cellular membranes. A liver‐specific pathway for PC biosynthesis is catalyzed by phosphatidylethanolamine N ‐methyltransferase (PEMT). We have found using quantitative polymerase chain reaction that PEMT mRNA increases in the liver by 96‐fold during the perinatal period in mice. To determine regions within the Pemt promoter which are important for gene activation, we prepared sections of the Pemt promoter upstream of a luciferase reporter gene. Our preliminary data suggests that activation elements may exist between −471 and −371bp (relative to the transcriptional start site). This section of the Pemt promoter (−471 to −371bp) also binds nuclear factors from perinatal mouse liver nuclear extract as determined by electromobility shift assays (EMSA). We have identified, within this region, a conserved putative binding site (GC box) for a member of the Sp family of transcription factors. An oligonucleotide containing a GC box competed out the formation of a nuclear protein‐ Pemt promoter complex by EMSA. Furthermore, mutation of the GC box but not another region within the oligonucleotide eliminated this effect. These experiments suggest that a GC‐rich element may regulate the perinatal expression of the mouse Pemt gene. Supported by the Canadian Institutes for Health Research, the National Science and Engineering Research Council and the Alberta Heritage Foundation for Medical Research .

Fetched live from OpenAlex and de-inverted. Abstracts are not stored in this database: the inverted indexes are 8.6 GB of the frame’s 9.3 GB of text, and the host has 13 GB free.

How this classification was reachedexpand

Full frame machine prediction

Teacher imitation

Not calibrated prevalence, not ground truth. Human validation pending. The Gemma side is a direct model label for every work in the frame, read from the title-only record. The Codex side is a classifier learned from the 10,348 direct Codex labels and calibrated to design-weighted sample rates; fields without enough sample support carry no Codex call. Candidate is the union of the two sides; consensus is their intersection. These outputs are machine_predicted_unvalidated and are not human labels.

metaresearch head score (Codex)0.000
metaresearch head score (Gemma)0.000
Version: metacan-v3-hybrid-931329e0061cValidation status: machine_predicted_unvalidated
Candidate categoriesnone
Consensus categoriesnone
DomainCandidate signal: none · Consensus signal: none
Study designCandidate signal: Bench or experimental · Consensus signal: Bench or experimental
GenreCandidate signal: Empirical · Consensus signal: Empirical
Teacher disagreement score0.002
Threshold uncertainty score0.005

Distilled classifier scores by category (both heads)

CategoryCodexGemma
Metaresearch0.0000.000
Meta-epidemiology (narrow)0.0000.000
Meta-epidemiology (broad)0.0000.000
Bibliometrics0.0000.000
Science and technology studies0.0000.000
Scholarly communication0.0000.000
Open science0.0000.000
Research integrity0.0000.000
Insufficient payload (model declined to judge)0.0020.001

Machine scores (provisional)

The two teacher heads of the student model, read on this work. A score orders the frame for review; it never asserts a category, and the validation status ships verbatim with every row.

Baseline scores from an immature model (maturity gate not passed, 7 training rounds). Scores rank; they never assert a category.

Opus teacher head0.012
GPT teacher head0.258
Teacher spread0.246 · how far apart the two teachers sit on this one work
Validation statusscore_only:v0-immature-baseline · verbatim from the scoring run: score_only means the number may rank works, and no category label ships from it

Classification

machine, unvalidated

Machine predicted; a candidate call from one source (direct Gemma or distilled Codex), not a consensus.

The models applied no category: nothing in the taxonomy fit this work.
Study designBench or experimental
Domainnot available
GenreEmpirical

How this classification was reached, model by model and score by score, is at the end of the page under "How this classification was reached".

Quick stats

Citations0
Published2007
Admission routes3
Has abstractyes

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